Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02354 ATGGTGAAATCAAAGAAATTCCGAGGTGTTAGGCAACGTCATTGGGGTTCTTGGGTCTCCGAGATTCGTCACCCGTTATTAAAAAGGAGGGTGTGGTTAGGAACATTTGAGACAGCTGAAGAAGCAGCTAGAGCATATGATGAAGCAGCAATTTTAATGAGTGGAAGAAATGCAAAAACAAATTTTCCAGTTTCAGATAACAATTCAATTGGAAATAACAATCAAAAACCCTTTGCAACTTCTTCTTCAATTTCAACTACTACTACATCATCACTCTCTGCAATTCTAAGTGCAAAGCTTAGAAAGTGTTGCAAATCACCTTCACCTTCTCTAACTTGTCTAAGGCTTGACACTGAAAATTCACACTTTGGAGTGTGGCAAAAAAGAGCGGGACCTCGTTCAGATTCCAACTGGATCATGATGGTCGAGTTGgaaaagaaaaagaaagaagaagacggagaagTTGTGTCAACTTTTGATTCTAAATTGTCTTCTAACGTTGTTGTTAACGATGATTCTGAGAAGGTTGTAAAACCagaaaaggaagatgaagaagaagatgaaataaatgatAACAATAACGGATTAGATGAGGAGCAACGAATTGCATTGCAGATGATTGAAGAACTTCTTAATCAGAATTAA 645 0.3411 MVKSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVSDNNSIGNNNQKPFATSSSISTTTTSSLSAILSAKLRKCCKSPSPSLTCLRLDTENSHFGVWQKRAGPRSDSNWIMMVELEKKKKEEDGEVVSTFDSKLSSNVVVNDDSEKVVKPEKEDEEEDEINDNNNGLDEEQRIALQMIEELLNQN 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02354 214 MobiDBLite consensus disorder prediction 170 198 - -
Car06g02354 214 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Car06g02354 214 PANTHER ETHYLENE RESPONSE FACTOR 1 214 - -
Car06g02354 214 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Car06g02354 214 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Car06g02354 214 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Car06g02354 214 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Car06g02354 214 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Car06g02354 214 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Car06g02354 214 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 214 - -
Car06g02354 214 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02354 Car-Chr6 25570580 25572159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02354 1 214 AP2-EREBP Transcription Factor Family AT1G15360 60.648 3.24e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car06g02354 AP2 9.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02354 - - gmx:100785898 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02354 06 25570580 25572159 Car06g02354 06 25570580 25572159 ECH