Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02343 ATGAAGCTCTTGGATGAGGAGCAGAAGCAAAAGACTGCTATGGAATTGCTTGAACAATATACACAATTCAAACATgagagagaaaagaaaggcaagaagaacaagaaagagaaggaTCCATTGAAACCAAAACATCCTATGTCAGCTTATTTCTTGTATACTAATGATATGAGAGTTTCTATTTTTGCAGAGAATAAAGGTGTCTTAGAGGTTTCCACTGTCACATTTGAAAAGTGGAAAAACATGACAGAAGAACAAAATAGACCCTATGAAGAGATGGTACAGAAAAAAGAAGAGGAAGCTGCAAATCCCATGAAGGAAGAGGAAGATCATATGAAACTTCAGAAACATGAAACCTTGCAATTGCTCAAGAAAAATTAA 381 0.3123 MKLLDEEQKQKTAMELLEQYTQFKHEREKKGKKNKKEKDPLKPKHPMSAYFLYTNDMRVSIFAENKGVLEVSTVTFEKWKNMTEEQNRPYEEMVQKKEEEAANPMKEEEDHMKLQKHETLQLLKKN 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02343 126 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 43 109 IPR009071 -
Car06g02343 126 MobiDBLite consensus disorder prediction 85 126 - -
Car06g02343 126 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 125 - -
Car06g02343 126 SMART hmgende2 42 110 IPR009071 -
Car06g02343 126 MobiDBLite consensus disorder prediction 15 46 - -
Car06g02343 126 MobiDBLite consensus disorder prediction 20 44 - -
Car06g02343 126 Gene3D High mobility group box domain 29 110 IPR036910 -
Car06g02343 126 CDD HMGB-UBF_HMG-box 43 100 - -
Car06g02343 126 SUPERFAMILY HMG-box 29 100 IPR036910 -
Car06g02343 126 Pfam HMG (high mobility group) box 43 103 IPR009071 -
Car06g02343 126 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 125 IPR044601 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02343 Car-Chr6 25312168 25316450 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Car06g02343 HMG_box 2.4e-11 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02343 K09273 - lja:Lj4g3v3002670.2 161.77