Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02319 ATGGAGGAATCATGGGAAAATTTCCATCTCCCCACGGATCAATTGGATTGTGGTGATGATTATTTCATAGATAATTGCGACAACATTAACACTGACGGTGACGATTTTCTTAGAGAGATTTTGTTACAAACACCACAAACTTTCTCTTCAGAAAGTGAAATAAGTGAATATTCATTTCAACAAGTTCAAAACGATTCGGTTACTGTTAACGTTAACGGCGTTGTGGAGGTTGTTGGAAACATGGTTAAAAGTAACAGTTCAAATTCAATAGTGTCTCAAAAACAAGAAGATCTGAATCCGAAAAAGGTTCCTCCTCGTCGATGTTCTTTACCAAAGACATACATTTTGTCTTTTGATAACTCAACTATGATACCGGCTACACCGGAACCGTGTCTCGATTTCGAAGGTAAACGTGATTCTCCTTTGGTTTCTAATAAACGGAGTCAAGAGACTAAAAATGGTGAACGGAAAACAAATGAACGTAACGGAGTCAAGAGACCAAGAAGCGGTTCTCAAACCGTTGACCACATTATGGCAGAGAGAAAACGGAGACAAGAGTTGACTGAGAGATTCATCGCACTTTCAGCCACCATACCTGGATTGAGCAAGACAGACAAGGCTTCAATTCTTCGAGCAGCAATTGATTATGTGAAACAACTTCAAGAACGTGTTAACGAGCTAGAGAAAGAAGACAAAAACGTTGGTGTCGCATCAGTGATGGTCCTCAAGAAAACTAATCTATGTGGAAATAATGATAATGAAGACACAAATTCTTGTGAAACAAATTGTGATGATGATTGCAACAACATCCTCCCAGAAATTGAAGCAAGAGTTATGGGAAAAGAAGTTCTAATTGAAATCCATTGTAAGAAACAAAATGGAATTGAGCTCAAATTACTTAACCATCTTGAAAATCTTCAGCTCTTTGTCACTGGTAGCAGTGTTTTGCCATTTGGGAAATCAGCTATTTCCATTACTATTATCGGTCAGATGAGTGAGGGGTACAAAGTAACAGGGAATGATCTAGTGAAAAGCATTAGGAAAGTGCTCTTGAAGCCACAAATGGTATGTGGAAGTGATCCGTACTAG 1089 0.3848 MEESWENFHLPTDQLDCGDDYFIDNCDNINTDGDDFLREILLQTPQTFSSESEISEYSFQQVQNDSVTVNVNGVVEVVGNMVKSNSSNSIVSQKQEDLNPKKVPPRRCSLPKTYILSFDNSTMIPATPEPCLDFEGKRDSPLVSNKRSQETKNGERKTNERNGVKRPRSGSQTVDHIMAERKRRQELTERFIALSATIPGLSKTDKASILRAAIDYVKQLQERVNELEKEDKNVGVASVMVLKKTNLCGNNDNEDTNSCETNCDDDCNNILPEIEARVMGKEVLIEIHCKKQNGIELKLLNHLENLQLFVTGSSVLPFGKSAISITIIGQMSEGYKVTGNDLVKSIRKVLLKPQMVCGSDPY 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02319 362 SMART finulus 177 226 IPR011598 GO:0046983
Car06g02319 362 Pfam Helix-loop-helix DNA-binding domain 175 221 IPR011598 GO:0046983
Car06g02319 362 PANTHER BHLH TRANSCRIPTION FACTOR 1 355 - -
Car06g02319 362 MobiDBLite consensus disorder prediction 130 174 - -
Car06g02319 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983
Car06g02319 362 MobiDBLite consensus disorder prediction 85 105 - -
Car06g02319 362 MobiDBLite consensus disorder prediction 132 164 - -
Car06g02319 362 Gene3D - 170 238 IPR036638 GO:0046983
Car06g02319 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 232 IPR036638 GO:0046983
Car06g02319 362 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 355 - -
Car06g02319 362 Coils Coil 210 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02319 Car-Chr6 24665530 24671093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02319 161 350 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.103 5.71e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car06g02319 HLH 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02319 - - mtr:MTR_4g009540 423.705