Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02318 ATGAACATTGAAATGTTCTCATACGACCCCACAACTACCACCACCTTAAATCTTCCAAACCACAACCAAACAACTCTCGAAGGAATCGCCGCGGTTGTCGGAGAACACGTCCTCTATGGACCCCACCACACTACCAAAACGACACCAACCATCTCCGTTTCAAACACAGAAAACAAAACACAAACAACAAACAAAGCCTACAGAGGTGTGAGAAAGAGACCGTGGGGAAGATGGTCAGCTGAAATACGTGACCGAATCGGTCGGTGTCGTCACTGGCTAGGAACATTCGACACTGCCGAAGAAGCCGCGCGTGCTTACGACGCAGCAGCTAGGCGATTGAGAGGTTCTAAAGCTCGAACTAATTTTAAGATTCCGTCGGTTTTTCCAATACCGTTATCACCGACTTCAGCTTCGTCTTCATCTTCTTCTGATACTGTTGTTAAGAACAGAAATAAATTTAACGGTGGTAGGAAATGTTGTGTTGTTACTTCTGTGGAACAATTGTTCAGTGGTGTTCCTGAAGTTCGAAGAGAAAGAGATAATAATGGGAATGTTGGTTTTGGTGGTACAACTACTACTGGAATGGTTATGTAA 594 0.4444 MNIEMFSYDPTTTTTLNLPNHNQTTLEGIAAVVGEHVLYGPHHTTKTTPTISVSNTENKTQTTNKAYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFKIPSVFPIPLSPTSASSSSSSDTVVKNRNKFNGGRKCCVVTSVEQLFSGVPEVRRERDNNGNVGFGGTTTTGMVM 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02318 197 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Car06g02318 197 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Car06g02318 197 Pfam AP2 domain 67 115 IPR001471 GO:0003700|GO:0006355
Car06g02318 197 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Car06g02318 197 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Car06g02318 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF084 18 179 - -
Car06g02318 197 Gene3D AP2/ERF domain 65 124 IPR036955 GO:0003700|GO:0006355
Car06g02318 197 CDD AP2 67 124 IPR001471 GO:0003700|GO:0006355
Car06g02318 197 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 179 - -
Car06g02318 197 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02318 Car-Chr6 24647271 24648335 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02318 5 129 AP2-EREBP Transcription Factor Family AT1G80580 58.268 3.16e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car06g02318 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02318 - - cam:101490906 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02318 06 24647271 24648335 Car06g02318 06 24647271 24648335 ECH