LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car06g02314	ATGGCAACAAGTGAGGGAATTAAGAAGGTTTGTGTAACAGGTGCAGGAGGGTTTATAGCATCATGGCTTGTTAAGGTTCTACTTTCCAAAGGTTACTCTGTTCATGGAACTGTTCGAGAACCTGGTAGTCAGAAATATGAACACTTGTTGAAACTTGAGAGAGCTTCTGAAAACCTTACACTCTTCAAAGCAGATCTCTTGAATTATGAATCTGTTTACTCTGCAATTGTTGGATGTAGTGCAGTTTTCCATGTTGCTTGCCCTGTGCCCTCAGCAGAGTTGCCTAATCCTGAGGTGGAAATGGTTGAGCCTGCAGTGAAGGGAACTGTTAATGTACTTGAAGCTTGTCTTAAAGCAAAAGTCGAGCGCGTTATCTTTTTATCATCTGCAGCTACTGTTATTTTCAACCCTAATTTTCCTAAGGATAAATTATTTGATGAGTCTTGTTGGTCTGACAAAGACTACTGCAAAGAAACCAAGAACTGGTATAGTTATTCCAAGACAATAGCAGAAGAGCAAGCCTTGAATTTTGCAAAAAGAACTGGGCTTAGTGTGGTAAGCATTTGTCCTACCCATGTTTTGGGGCCAATTTTGCAGTCAACCACTAATGCAAGTAGCTTATTTGTCATCAACATTTTAAAAGACTCTGATTCAGCGGAGAATAGGTATCCTTGGATAGTTGACGTACGAGACCTAGTTGATGCAATACTTTTGGCTTATGAGAAGCACGACGACGTGGAAGGGAGATACATATGCGCTTCACACGGTATCTCGACACGAGATTTGGCTGAGAAATTGAAGAGTATATATCCAAACTACAAGTACCCTACAAAGACATTGGAGGAAACACTCATTGATTCAATTGAGAGCTATAAAGAAGCTGGACTCCTTCAATCACAATAA	903	0.4031	MATSEGIKKVCVTGAGGFIASWLVKVLLSKGYSVHGTVREPGSQKYEHLLKLERASENLTLFKADLLNYESVYSAIVGCSAVFHVACPVPSAELPNPEVEMVEPAVKGTVNVLEACLKAKVERVIFLSSAATVIFNPNFPKDKLFDESCWSDKDYCKETKNWYSYSKTIAEEQALNFAKRTGLSVVSICPTHVLGPILQSTTNASSLFVINILKDSDSAENRYPWIVDVRDLVDAILLAYEKHDDVEGRYICASHGISTRDLAEKLKSIYPNYKYPTKTLEETLIDSIESYKEAGLLQSQ	300

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car06g02314	300	Pfam	NAD dependent epimerase/dehydratase family	10	247	IPR001509	-
	Car06g02314	300	Gene3D	-	2	300	-	-
	Car06g02314	300	PANTHER	NAD DEPENDENT EPIMERASE/DEHYDRATASE	8	278	-	-
	Car06g02314	300	PANTHER	NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN	8	278	-	-
	Car06g02314	300	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	8	295	IPR036291	-
	Car06g02314	300	CDD	FR_SDR_e	10	283	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car06g02314	Car-Chr6	24522333	24526386	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car06g02314	9	297	Monolignol Biosynthesis Gene Families	AT2G33590	55.096	3.47e-117	338

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car06g02314	-		-	mtr:MTR_4g009040	454.521