Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02312 ATGGCCAGACCCCAACAACGTTATCGTGGTGTACGCCAGAGACATTGGGGCTCTTGGGTCTCTGAAATTCGTCACCCTTTATTGAAGACAAGAATATGGTTAGGAACATTTGAAACAGCAGAAGATGCAGCAAAAGCATATGATGAAGCTGCAAGATTAATGTGTGGTCCAAAAGCTCGCACCAATTTCCCATACAACCCAAATGGACCACAATCATCTTCATCTAAGCTTCTCTCTGCCACTTTAACTGCAAAATTAAATAAATGTCACATGGCTTCACTTTCTCTTCAAATGTcaaaacaacaacaacaaccacaaAGAGAGCCTAATCATGTTTCATCAACACAAATGTCTAATTCAATTATTAACCCTTTTGTTGTGTCTAATAATGACATTGTTGGAACAAGTGGTGAAAATGGTTTTAGATGGCTTGAtgaagtgaattgggttggttttgaaggtcaagttgaagttTCTCATCAACAATTTCAGCCTGTTCTTGAAGATGATCACATTGAACAAATGATTCAAGAGTTGCTTGACTATGGTTCAATTGAGCTTTGTTCTGTCGGTTCATCTTAG 582 0.3454 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAAKAYDEAARLMCGPKARTNFPYNPNGPQSSSSKLLSATLTAKLNKCHMASLSLQMSKQQQQPQREPNHVSSTQMSNSIINPFVVSNNDIVGTSGENGFRWLDEVNWVGFEGQVEVSHQQFQPVLEDDHIEQMIQELLDYGSIELCSVGSS 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02312 193 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 189 - -
Car06g02312 193 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Car06g02312 193 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Car06g02312 193 MobiDBLite consensus disorder prediction 95 115 - -
Car06g02312 193 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Car06g02312 193 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Car06g02312 193 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Car06g02312 193 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Car06g02312 193 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Car06g02312 193 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Car06g02312 193 PANTHER ETHYLENE RESPONSE FACTOR 1 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02312 Car-Chr6 24453927 24455704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02312 1 190 AP2-EREBP Transcription Factor Family AT5G25190 61.579 6.00e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Car06g02312 AP2 1.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02312 - - gmx:100527365 280.411