Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02300 ATGGCCGAAAACGATACAAATAAAGGAAGGAGAATCGCCATAATTGGCGTATCTACCGTGTTATTGGTGGCTATGGTTGTTGCTGTCACCGTTGGCACATATCGCAATCAAAATGGTTATGATGATAATATAGAAGACACCAAAAAGAACCATGTTGCTTCTACTATGAAAGCAGTTCAAACAATTTGTCATCCCACTGATTACAAGAAGGAATGTGAGGAAACCCTCATAGCAGAGGCTGAGGCTGACAATGTCACTGATCCAAAAGAACTTATCAAAATAGCATTTAATGTTACCATGAAAAGAATTGGTGATAAAATTAAGGAAACCGATCTCTTGCACGAGGTTGAGAAAGATCCTAGATCAAAGGATGCACTTGATACATGCAAACAACTTATGGATCTTTCAATCGACGAATTCACTAGGTCACTTGATGGAATTAATGAGTTTGATCTACAAAATATTGACAAAATCCTTATGAATCTGAAGGTTTGGCTTAACGGTGCTGTTACATATATGGATACATGTTTGGATGGATTTGAAAACACCACTAGTGAAGCTGGTACAAAGATGAAAGAGTTATTAACATCAAGCATACACATGAGTAGCAATGCTCTTGCCATTATTTCAGATTTTGCCGACACGGTCTCGGATTGGAATGCCACAAATATTCTTAGACGCCACCTTCTTCATGATTCTGAGACTCCTTCTTCGGTTGATCATCATAAACAGCACAATGCTATGAAAAATGTATTCAAACACAAGCCTAATGTTACTGTCGCCTTAGATGGCAGTGGTGATTTTAAGAGCATCAATGAGGCATTGACGCGGGTACCTGAGAAGAGCAAAAAACCATTTGTGATATACATTAAGGAAGGTGTTTACCCAGAGTATGTTGAAGTTACCAAACATATGACGCACGTTGTGTTTGTTGGTGACGGTGGGAAGAAGACAATAATCACTGGCAACAAAAACTTTATTGATGGCGTTAACACCTATAGAACCGCCTCTGTTGCTATTCAAGGAGATCACTTTGTGGCCATTAACATGGGATTTGAGAACTCAGCAGGCCCACATAAACATCAAGCAGTGGCACTAAGGGTTCAAGGAGATAAGACAATATTCTTCAATTGCTCAATGGATGGATATCAAGACACACTTTATGTACACACTATGCGTCAATTTTACCGTGATTGCACCATTTCAGGTACCATTGACTTTGTCTTTGGTAATGCCCTAGCTGTTTTCCAAAACTGTAAATTTGTTGTCAGAAAGCCAATGTCAAACCAACAATGCATTGTGACCGCACAAGGAAGGAAGGAAAGATTCCAACCATCAGCAATAGTCATCCAAGGAGGTTCCATTGTATCTGATCCTGAGTTCTACCCAGTGAGGTTTGACAACAAGGCATACCTCGCCCGTCCATGGAAGAACTTTTCTAGGACTATCATAATGGACGCTTTCATCGATGATTTGATTCATACTGATGGCTATTTGCCATGGCAAACAATAGAGGGACCTTCTGGCATGGACACTTGCTTCTATGCTGAGTACCATAATTTTGGCCCTGGTTCAGACAAATCAAAACGTGTAAATTGGGCAGGTATTTGGAACCTCAATGCAAAGGCTGCACATTGGTTTGCACCATCCAAATTCTTCCATGGTGGTGATTGGATTGAGGCAACTGGAATTCCTTTCTTTTCTGGTATTCCCGATCATCATAGGCACAAAGAGACTCTGCTTAAATGGTGA 1752 0.4035 MAENDTNKGRRIAIIGVSTVLLVAMVVAVTVGTYRNQNGYDDNIEDTKKNHVASTMKAVQTICHPTDYKKECEETLIAEAEADNVTDPKELIKIAFNVTMKRIGDKIKETDLLHEVEKDPRSKDALDTCKQLMDLSIDEFTRSLDGINEFDLQNIDKILMNLKVWLNGAVTYMDTCLDGFENTTSEAGTKMKELLTSSIHMSSNALAIISDFADTVSDWNATNILRRHLLHDSETPSSVDHHKQHNAMKNVFKHKPNVTVALDGSGDFKSINEALTRVPEKSKKPFVIYIKEGVYPEYVEVTKHMTHVVFVGDGGKKTIITGNKNFIDGVNTYRTASVAIQGDHFVAINMGFENSAGPHKHQAVALRVQGDKTIFFNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNALAVFQNCKFVVRKPMSNQQCIVTAQGRKERFQPSAIVIQGGSIVSDPEFYPVRFDNKAYLARPWKNFSRTIIMDAFIDDLIHTDGYLPWQTIEGPSGMDTCFYAEYHNFGPGSDKSKRVNWAGIWNLNAKAAHWFAPSKFFHGGDWIEATGIPFFSGIPDHHRHKETLLKW 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02300 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 212 IPR035513 -
Car06g02300 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 212 IPR035513 -
Car06g02300 583 PANTHER PECTINESTERASE 10 571 - -
Car06g02300 583 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Car06g02300 583 Pfam Pectinesterase 257 555 IPR000070 GO:0030599|GO:0042545
Car06g02300 583 SUPERFAMILY Pectin lyase-like 255 569 IPR011050 -
Car06g02300 583 SMART PMEI_2 54 208 IPR006501 GO:0004857
Car06g02300 583 Pfam Plant invertase/pectin methylesterase inhibitor 58 208 IPR006501 GO:0004857
Car06g02300 583 CDD PMEI-like_3 61 213 - -
Car06g02300 583 Gene3D - 251 570 IPR012334 -
Car06g02300 583 PANTHER PECTINESTERASE 10 571 - -
Car06g02300 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 53 210 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02300 Car-Chr6 24221084 24223253 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02300 3 570 Carbohydrate Esterase AT3G05610 48.421 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02300 K01051 - gmx:100776244 955.281