Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02292 ATGGATCTTCTAAAACCAGGGACATATCCATCTGAAAATTTGAACCTTCCATGCTTAGAACCTTCTATGGATACTCAAACACATAGAAAACACAAACACGACTCATCTCCTCATCTTGTACTTGATCTAAGTCTCTCCAACAAGGATTCAGGTGATGACTACTCAACCCTTACTGAAAAAATCATTGGTCAGACTTTACCTACCTCTCGACCAAATTTTAAGTCATCAGAGTTCATTTTCTCCGAAAACCAGAGGGTAAAAGACCAAAAAAAGGGTGATGGTTACTCAAATCATGAACTCAACCTCCTCAATTGTTTCCATACAAATTTATCAGAAAGCTCATCAGAATCTAGTCATGAAAATGAACTTGATCCAAGAGTTTTCTCATGCAACTACTGTCAAAGAAAATTTTATAGCTCACAAGCACTTGGAGGACACCAAAATGCACACAAGAGAGAAAGAACATTAGCAAGAAGAGGCTATAAAGCCGGTGCTTCAGGTTCGTCGGTTGATTTGGGACAAAGGTATACAACAACAAGCATGGCTTCTTCTCTACCTTCTTATGGATTATGTAACAAATCACTTGGCATTCAAGTGCATTCTATGATTAACAAACCTTCTTTCCAAACACCCTTTTATGGATTTTGTTCAAATGGATGCCAAAGACAACATTTTGATACACAATCAGCAATTGGAAAATTTCATGTAATGGCTGAAAATGAACCATCTTTGAGTAGTGAGATTCAAAGGGTAGCCATGTTTCCTAAAAGGTTTGTAAATGAAGGATTTGGAGGTTACTTATTTGGTAGTAATACTTCTCATTTGAAGTCTAAACAAGAGAATTTGCAGAAGCTTGATTTGTCCCTTAAGCTCTAA 876 0.3687 MDLLKPGTYPSENLNLPCLEPSMDTQTHRKHKHDSSPHLVLDLSLSNKDSGDDYSTLTEKIIGQTLPTSRPNFKSSEFIFSENQRVKDQKKGDGYSNHELNLLNCFHTNLSESSSESSHENELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGASGSSVDLGQRYTTTSMASSLPSYGLCNKSLGIQVHSMINKPSFQTPFYGFCSNGCQRQHFDTQSAIGKFHVMAENEPSLSSEIQRVAMFPKRFVNEGFGGYLFGSNTSHLKSKQENLQKLDLSLKL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02292 291 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 86 291 - -
Car06g02292 291 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 16 57 - -
Car06g02292 291 MobiDBLite consensus disorder prediction 1 36 - -
Car06g02292 291 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 16 57 IPR044246 GO:0009788
Car06g02292 291 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 86 291 IPR044246 GO:0009788
Car06g02292 291 SUPERFAMILY beta-beta-alpha zinc fingers 125 155 IPR036236 -
Car06g02292 291 Gene3D Classic Zinc Finger 106 181 - -
Car06g02292 291 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Car06g02292 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 155 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02292 Car-Chr6 24125201 24126268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02292 81 291 C2H2 Transcription Factor Family AT5G25160 40.678 2.12e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car06g02292 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02292 - - cam:101510905 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02292 06 24125201 24126268 Car06g02292 06 24125201 24126268 ECH