Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02290 ATGCCTGCAACTGGAGGTTCAATGAATCCAGTAAATACACTGGGCCCAACAATTGCTATAAACAACTTCAGAGGCATATGGTTATATCTCATATCTCCTATTATTGGAGCTCTAACTGGGGCAGGTGCATACACTGTTGTCAAATTGCCTGATGAAGAATTTAACCCTGAGTTAAAAGCCTCTTCTGCCCCTGGAAGTGGGAGAACTTGCGGGAATTGCGGTGGGAGCCACCGTCATGCTCAACATACTCATAGCAGGGCCTGCAACTGGAGGTTCTATGGTGCTCATCTCAATCCTGCTGTTACCATCTCATTTGCTGCATTGAAGCATTTTCCTTGGAAGAATTGGGAGAATTTGCGAGAATCGCGGTGGGAGCCACCGCCTGCAACTGGAGGTTCAATGAATCCAGTAAGAACCCTGGGCCAAACAACTTTTACAAACAACTTTAGAGGCATATGGTTATATCCCATAGCTCCTATTCTTGGAGCTCTAACTCGGACATGTGCATACACTGGTGTCAAATTGCTTGATGAAGAATTTAACCCTGAATTAAAAGTATCTTCTGCCCTTGGAAGTATCAGAAGGTGA 588 0.449 MPATGGSMNPVNTLGPTIAINNFRGIWLYLISPIIGALTGAGAYTVVKLPDEEFNPELKASSAPGSGRTCGNCGGSHRHAQHTHSRACNWRFYGAHLNPAVTISFAALKHFPWKNWENLRESRWEPPPATGGSMNPVRTLGQTTFTNNFRGIWLYPIAPILGALTRTCAYTGVKLLDEEFNPELKVSSALGSIRR 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02290 195 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 93 115 - -
Car06g02290 195 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 2 65 - -
Car06g02290 195 SUPERFAMILY Aquaporin-like 128 182 IPR023271 -
Car06g02290 195 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Car06g02290 195 PANTHER AQUAPORIN NIP2-1 2 65 IPR034294 -
Car06g02290 195 Gene3D Glycerol uptake facilitator protein. 1 59 IPR023271 -
Car06g02290 195 Gene3D Glycerol uptake facilitator protein. 127 179 IPR023271 -
Car06g02290 195 SUPERFAMILY Aquaporin-like 88 115 IPR023271 -
Car06g02290 195 Pfam Major intrinsic protein 128 169 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g02290 195 Pfam Major intrinsic protein 1 44 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g02290 195 PANTHER AQUAPORIN NIP2-1 93 115 IPR034294 -
Car06g02290 195 PANTHER AQUAPORIN NIP2-1 128 191 IPR034294 -
Car06g02290 195 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 128 191 - -
Car06g02290 195 SUPERFAMILY Aquaporin-like 2 57 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02290 Car-Chr6 24085868 24091262 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02290 2 61 Major Intrinsic Protein MIP AT1G80760 63.333 1.20e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02290 K09874 - cam:101515590 125.561