Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02250 ATGGCCAAGAAATCTCAAAAAACTCTCAAAAACACTTCTACTTCTTCTTCAACCATGGTGAAACAACGTACACGTAAAAGTATACCAAGAAATTCACCTCCACAAAGAAGCTCAATCTATAGGGGTGTTACAAGACATCGTTGGACTGGTCGATATGAGGCTCATTTGTGGGATAAGAATTGTTGGAATGAATCTCAGAGCAAGAAAGGAAGACAAGTATATCTAGGAGCATATGATGATGAAGAAGCTGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTATTGGGGCCAAGACACAATTCTCAATTTTCCAGTATCAAATTACCAAGATGAGCTCAAAGAGATGGAGAACCTATCAAAAGAAGAATATATTGGATCATTAAGAAGAAAAAGCAGTGGATTTTCTAGAGGAGTTTCAAAATACAGAGGAGTAGCAAGACACCACCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTATTCGGCAACAAATATTTATACCTTGGAACTTATGCTACACAAGAAGAAGCCGCCACAGCATATGACATGGCAGCAATAGAGTATAGAGGACTTAACGCCGTTACAAACTTTGACCTTAGCCGTTATATCAATTGGTTACGTCCtaaaaacaaagacaacaaaaataatattaataataatcacactcaaaatagtagcaatgatGAAGAGCTAGATCTTAATCAGGAACTTGATGGTAGTGCCACTTCAGCATCTTCAACGTTTGATCTTATTTTAAAATCATCATCAAAATTCAAAGAAATGTTAGAAAATACATCATCAGAAAATAGTCGCACTCCATCACCTCCTGAATCAAGTCTTCCGAGTCGTACATTTCCTGAAGATATTCAAACGATCTTTGAAACTCAAGATTCAGAAGTCTACACTGAAAATGATGATGATATTATATTTGGTGAGTTGAGTTCAATTGCTGCACCAATTTTTCATTATGGGCTTGATGTTTGA 987 0.3576 MAKKSQKTLKNTSTSSSTMVKQRTRKSIPRNSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQDTILNFPVSNYQDELKEMENLSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYINWLRPKNKDNKNNINNNHTQNSSNDEELDLNQELDGSATSASSTFDLILKSSSKFKEMLENTSSENSRTPSPPESSLPSRTFPEDIQTIFETQDSEVYTENDDDIIFGELSSIAAPIFHYGLDV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02250 328 ProSiteProfiles AP2/ERF domain profile. 39 105 IPR001471 GO:0003700|GO:0006355
Car06g02250 328 ProSiteProfiles AP2/ERF domain profile. 141 199 IPR001471 GO:0003700|GO:0006355
Car06g02250 328 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR-RELATED 1 313 - -
Car06g02250 328 SUPERFAMILY DNA-binding domain 38 107 IPR016177 GO:0003677
Car06g02250 328 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Car06g02250 328 PRINTS Ethylene responsive element binding protein signature 181 201 IPR001471 GO:0003700|GO:0006355
Car06g02250 328 Gene3D AP2/ERF domain 39 107 IPR036955 GO:0003700|GO:0006355
Car06g02250 328 Gene3D AP2/ERF domain 140 201 IPR036955 GO:0003700|GO:0006355
Car06g02250 328 SMART rav1_2 141 205 IPR001471 GO:0003700|GO:0006355
Car06g02250 328 SMART rav1_2 39 111 IPR001471 GO:0003700|GO:0006355
Car06g02250 328 MobiDBLite consensus disorder prediction 262 285 - -
Car06g02250 328 MobiDBLite consensus disorder prediction 1 41 - -
Car06g02250 328 CDD AP2 38 107 IPR001471 GO:0003700|GO:0006355
Car06g02250 328 SUPERFAMILY DNA-binding domain 140 201 IPR016177 GO:0003677
Car06g02250 328 CDD AP2 140 201 IPR001471 GO:0003700|GO:0006355
Car06g02250 328 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 313 - -
Car06g02250 328 MobiDBLite consensus disorder prediction 211 241 - -
Car06g02250 328 MobiDBLite consensus disorder prediction 1 39 - -
Car06g02250 328 Pfam AP2 domain 39 97 IPR001471 GO:0003700|GO:0006355
Car06g02250 328 Pfam AP2 domain 140 191 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02250 Car-Chr6 23256296 23263670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02250 35 251 AP2-EREBP Transcription Factor Family AT5G57390 61.927 1.65e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Car06g02250 AP2 4.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02250 K09285 - rcu:8280276 429.869