Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02236 ATGACTACCGCTCCCAACGGCCACCATTTCACCGTTACCATCCCCACCGCGAATGCTGATGACAACGACGTTCTCCCTCCTCCTGAGGATAATAATAATAACAACAACAACCGTGATGACGAGGACGATGAACTCATCGATCCTGATGATCCTTTTGATATTGCTCAAACTAAGAATGCTTCGCATGAGACTCTTCGCCGTTGGAGACAAGCAGCACTGGTGCTCAATGCGTCCAGGCGTTTCAGATATACTCTGGACTTCAAAGGGGaggaggaaaaacagcagaagaagagcttaattagagcccatgcacaagtcattagaGCTGCATTGCTTTTTAGATTGGCCGGTGAACGTGAACTAGTGATAAGTCCAGCAGCGACACCCCCACCTTCAACTTCAGTTGGTGACTATGCAGTTGGGCTAGAACAACTTGCTTCAATGTCTAAGGATCAGAATGTTTCTGTTTTACAGCAATATGGAGGGGTTAAAGGCTTATCAAGTTTACTAAAATCAAATCCAGATAAAGGAATTAGTGGAGATGATGCTGATCTATTGAAAAGGAAAAATGCATTTGGAACTAACACATATCCTCGGAAAAAAGGGAGAAGTTTCTGGAGGTTTTTATGGGAAGCTTGGCAAGATCTGACTCTCATAATATTGATTATAGCAGCTGTAGTGTCATTGGTACTTGGAATAAAAACAGAGGGTTTGAGTGAAGGATGGTATGATGGTGGAAGCATTGCTTTTGCAGTTTTGCTTGTTATTGTAGTAACAGCTGTTAGTGATTATCGACAATCTCTGCAGTTTCAGAATTTGAATGCAGAAAAACAAAATATACAATTAGAGGTCATTAGAGGTGGGAGAACAATTAAAATATCAATATTTGATATTGTTGTTGGTGATGTTATACCCCTTAAAATAGGAGATCAGGTGAGTTTGTACGATATTTTCAGTCACTCACTTGCCATTGATGAATCCAGTATGACCGGTGAAAGCAAGATTGTTCATAAGGATCACAAAACACCTTTTTTTATGTCTGGTTGCAAAGTAGCAGATGGAGTTGGTGTTATGCTGGTAACTGGTGTTGGTATTAACACTGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGACACTGGAGAAGAGACTCCGTTACAGGTACGTTTGAATGGAGTGGCAACTTTTATAGGTATAGTTGGGCTTACTGTAGCTGTTTTAGTGCTTGCAGTCCTCTTGGGCAGATACTTTTCTGGCCACACGGATGATTTAAATGGAAATCCCGAATTTGTTTCTGGAAAGACTAGTATTAGTGATGCAGTTGATGGGGTCATCAAAATATTTACCATTGCAGTCACGATTGTAGTTGTTGCAGTTCCTGAAGGTCTACCTCTGGCTGTTACCTTAACCCTGGCATACTCAATGCGGAAAATGATGGCAGATAAAGCCTTAGTGCGAAGGCTGTCAGCCTGCGAAACCATGGGCTCTGCTACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGATGACTGTTGTTGAGGCATATGTCGGGAGGGGCAAAATAAATCCACCAGTAGACTCATCAAAGTTGCAGCCAGAAACATTATCTCTGATACATGAAAGCGTTGCACAGAATACCACTGGAAATGTTTTTGTGTCCAAGGATGGTGGAGAGGTAGAGGTTTCAGGATCACCGACTGAGAAGGCAATTCTTTCATGGGCAGTCAAGTTGGGTATGAATTTTGATCTTACCAGATCTAATTCGACAGTTCTTCACGTCTTCCCATTCAATTCTGAGAAAAAACGAGGTGGTGTTGCTCTGAAGCTGGCGGACTCTGGAGTGCATATACACTGGAAAGGAGCTGCAGAGATAGTTCTAGGAACATGTACTCAATATCTTGATTCAAATGGTCACTTGCAATCCATTGAAGAAGAAAAGGATTTTTTCAAGGAGGCTATTGATGACATGGCTGCTCGCAGCTTGCGTTGTGTTGCCATTGCATACAGATCGTATGAATTAGACGAAATTCCATCTAATGAGGAGGATTTAGACAAATGGTCTTTACCAGATCATGAGCTTGTTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGTGTCAAAGAGGCTGTGAGAGTATGCACTGATGCCGGTGTTAAGGTACGCATGGTCACTGGAGACAACCTTCAAACAGCAAAGGCAATAGCTCTGGAGTGTGGGATACTGGCTTCAAATGAAGACGCTGTTGAGCCAAATATAATTGAAGGAAAGGTATTCAGAGAGCTATCTGAAAAGGAAAGGGAACAGGTTGCCAAGAAAATTACGGTGATGGGCAGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCACTACGTAAAGGAGGTGAAGTGGTTGCTGTCACAGGTGATGGCACCAATGATGCCCCTGCACTACACGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCTTGGATGATAACTTTGCATCAGTTGTAAAGGTTGTTCGCTGGGGCCGCTCTGTATATGCAAATATTCAGAAATTTATCCAGTTCCAGCTTACTGTCAATGTTGCTGCTCTTGTAATAAATGTTGTGGCAGCAATAACTTCTGGTGATGTACCTTTAAATGCAGTACAGCTTTTGTGGGTCAACCTTATCATGGATACACTCGGGGCCCTTGCACTGGCTACTGAACCACCAACAGACCACCTAATGGACAGATCACCTGTTGGTCGAAGGGAACCTCTTATAACAAATATCATGTGGAGAAACTTGATCGTACAGGTATTCAATGAGTTCAATGCTCGGAAACCAGATGAAATGAATGTCTTCCGAGGAGTGACTAAGAACCGTCTCTTCATGGGAATTGTTGGAATAACCATCATACTTCAGATAATCATCATCGAGTTCCTTGGAAAGTTTGCCTCAACAGTGAGGCTTGATTGGAAGTTGTGGCTTGCTTCTATTTGTATTGGCCTTGTCAGCTGGCCTCTTGCTATAGCTGGAAAATTCATTCCAGTTCCCAAAACACCATTGTCGCGTTACTTCACGAAGCCACTAAGGCGATTGAGGAGGTCTCGTTCTGCGCAATAG 3153 0.4196 MTTAPNGHHFTVTIPTANADDNDVLPPPEDNNNNNNNRDDEDDELIDPDDPFDIAQTKNASHETLRRWRQAALVLNASRRFRYTLDFKGEEEKQQKKSLIRAHAQVIRAALLFRLAGERELVISPAATPPPSTSVGDYAVGLEQLASMSKDQNVSVLQQYGGVKGLSSLLKSNPDKGISGDDADLLKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAVVSLVLGIKTEGLSEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEVIRGGRTIKISIFDIVVGDVIPLKIGDQVSLYDIFSHSLAIDESSMTGESKIVHKDHKTPFFMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVLVLAVLLGRYFSGHTDDLNGNPEFVSGKTSISDAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGRGKINPPVDSSKLQPETLSLIHESVAQNTTGNVFVSKDGGEVEVSGSPTEKAILSWAVKLGMNFDLTRSNSTVLHVFPFNSEKKRGGVALKLADSGVHIHWKGAAEIVLGTCTQYLDSNGHLQSIEEEKDFFKEAIDDMAARSLRCVAIAYRSYELDEIPSNEEDLDKWSLPDHELVLLAIVGIKDPCRPGVKEAVRVCTDAGVKVRMVTGDNLQTAKAIALECGILASNEDAVEPNIIEGKVFRELSEKEREQVAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAITSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRSPVGRREPLITNIMWRNLIVQVFNEFNARKPDEMNVFRGVTKNRLFMGIVGITIILQIIIIEFLGKFASTVRLDWKLWLASICIGLVSWPLAIAGKFIPVPKTPLSRYFTKPLRRLRRSRSAQ 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02236 1050 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 439 523 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car06g02236 1050 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 774 889 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car06g02236 1050 Gene3D - 211 946 - -
Car06g02236 1050 SUPERFAMILY Calcium ATPase, transduction domain A 281 374 IPR008250 -
Car06g02236 1050 PANTHER CALCIUM-TRANSPORTING ATPASE 947 1042 - -
Car06g02236 1050 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 507 713 IPR023299 GO:0000166
Car06g02236 1050 MobiDBLite consensus disorder prediction 1 18 - -
Car06g02236 1050 MobiDBLite consensus disorder prediction 1 51 - -
Car06g02236 1050 Pfam E1-E2 ATPase 280 479 - -
Car06g02236 1050 SMART Cation_ATPase_N_a_2 159 233 IPR004014 -
Car06g02236 1050 Gene3D - 511 708 IPR023299 GO:0000166
Car06g02236 1050 Pfam Cation transporting ATPase, C-terminus 946 1024 IPR006068 -
Car06g02236 1050 Pfam Cation transporting ATPase, C-terminus 893 948 IPR006068 -
Car06g02236 1050 PANTHER CATION TRANSPORTING ATPASE 49 948 - -
Car06g02236 1050 PANTHER CATION TRANSPORTING ATPASE 947 1042 - -
Car06g02236 1050 ProSitePatterns E1-E2 ATPases phosphorylation site. 503 509 IPR018303 -
Car06g02236 1050 Gene3D - 60 114 - -
Car06g02236 1050 SFLD Haloacid Dehalogenase 483 860 - -
Car06g02236 1050 PRINTS P-type cation-transporting ATPase superfamily signature 325 339 - -
Car06g02236 1050 PRINTS P-type cation-transporting ATPase superfamily signature 701 712 - -
Car06g02236 1050 PRINTS P-type cation-transporting ATPase superfamily signature 832 844 - -
Car06g02236 1050 PRINTS P-type cation-transporting ATPase superfamily signature 501 515 - -
Car06g02236 1050 PRINTS P-type cation-transporting ATPase superfamily signature 723 733 - -
Car06g02236 1050 PRINTS P-type cation-transporting ATPase superfamily signature 808 827 - -
Car06g02236 1050 CDD P-type_ATPase_Ca_PMCA-like 185 941 - -
Car06g02236 1050 Gene3D - 498 853 IPR023214 -
Car06g02236 1050 SUPERFAMILY HAD-like 499 913 IPR036412 -
Car06g02236 1050 Pfam haloacid dehalogenase-like hydrolase 498 822 - -
Car06g02236 1050 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 149 948 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Car06g02236 1050 Gene3D - 948 1029 - -
Car06g02236 1050 PANTHER CALCIUM-TRANSPORTING ATPASE 49 948 - -
Car06g02236 1050 SFLD p-type atpase 483 860 IPR044492 -
Car06g02236 1050 SUPERFAMILY Calcium ATPase, transmembrane domain M 160 1027 IPR023298 -
Car06g02236 1050 Pfam Cation transporter/ATPase, N-terminus 161 228 IPR004014 -
Car06g02236 1050 Coils Coil 643 663 - -
Car06g02236 1050 Pfam Ca2+-ATPase N terminal autoinhibitory domain 49 90 IPR024750 GO:0005516
Car06g02236 1050 PRINTS Sodium/potassium-transporting ATPase signature 620 638 - -
Car06g02236 1050 PRINTS Sodium/potassium-transporting ATPase signature 494 515 - -
Car06g02236 1050 PRINTS Sodium/potassium-transporting ATPase signature 246 266 - -
Car06g02236 1050 Gene3D - 184 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02236 Car-Chr6 23050542 23066364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02236 40 1049 Primary Pumps ATPases AT3G21180 74.929 0.0 1568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02236 K01537 - gmx:100777143 1700.26