Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02211 ATGGGAAGATCACCATGTTGTGAAAAAGCACACACAAACAAAGGAGCATGGACAAAAGAAGAAGATGATAGATTAATATCTTATATTAGAGCACATGGTGAAGGTTGTTGGCGATCTCTTCCTAAAGCAGCTGGTCTTCTCCGATGCGGCAAAAGTTGCCGTCTCCGGTGGATTAATTATCTCCGACCAGACCTTAAACGTGGTAACTTTACAGAAGAAGAAGATGAACTCATCATCAAACTTCATAGTCTCCTTGGTAACAAATGGTCTTTGATAGCTGGAAGATTACCAGGAAGAACAGATAATGAAATTAAGAATTATTGGAACACACACATAAGAAGAAAACTTTTGAACAGAGGAATTGACCCTGCAACTCATAGACCTATAAATGAAGTTTCAAATTCTCATTCTCATTCTCAGAATCAAGAAACTGTAACTATAGCTATTGCTGCATCTGCATCAACTACTACTACTACAATTCCTTCATCAACAACACCAAAAACAATATCTTTTGCTTCATCTATTAAACAAGAACAATatcaccatcattatcatcatcatcatcatcataataatcataatcatGAAGAGATGGTTAAAGGGTCTAATTCAGTTTCAGAAAGATGTCCTGACTTGAATCTTGAGCTAACAATTAGTCCTCCACGTCAACAAGAACATGATGAAGCATTCAAAAACACAGAGAGAAATCTCTGTTTTGTTTGTAGTTTGGGATTGCAGAACAGTAAAGATTGTAGCTGTGAGAATACTAGTAGCAGTGGAAAACCTACTACTGCTCCAGCTTATGATTTCTTGGGTTTGAAATCTGCTGTTTGGGATTACACTGGTTTGGaaatgaaatga 861 0.3496 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPINEVSNSHSHSQNQETVTIAIAASASTTTTTIPSSTTPKTISFASSIKQEQYHHHYHHHHHHNNHNHEEMVKGSNSVSERCPDLNLELTISPPRQQEHDEAFKNTERNLCFVCSLGLQNSKDCSCENTSSSGKPTTAPAYDFLGLKSAVWDYTGLEMK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02211 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car06g02211 286 CDD SANT 69 112 IPR001005 -
Car06g02211 286 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 259 - -
Car06g02211 286 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Car06g02211 286 Gene3D - 68 146 - -
Car06g02211 286 CDD SANT 16 61 IPR001005 -
Car06g02211 286 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car06g02211 286 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Car06g02211 286 SMART sant 66 114 IPR001005 -
Car06g02211 286 SMART sant 13 63 IPR001005 -
Car06g02211 286 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car06g02211 286 Gene3D - 14 66 - -
Car06g02211 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car06g02211 286 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car06g02211 286 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02211 Car-Chr6 22689147 22690543 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02211 1 286 MYB Transcription Factor Family AT4G38620 56.667 2.04e-109 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car06g02211 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02211 K09422 - gmx:780553 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02211 06 22689147 22690543 Car06g02211 06 22689147 22690543 ECH