LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car06g02207	ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACTATCACTCTCGAGGTTGAGAGTAGCGACACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGCACTCTTGCAGATTATAACATACAAAAGGAATCAACACTTCACTTGGTGTTGAGGCTCAGAGGAGGAACCATGattaaagtgaagactctaactggaaaagaaattgaaattgacattgaGCCAACCGATACAATTGATCGTATCAAGGAACGCGTTGAAGAAAAAGAGGGAATTCCACCTGTGCAGCAGAGGCTCATATATGCTGGTAAGCAGCTTGCTGATGACAAAACAGCTAAAGAGTACAACATTGAGGGTGGTTCTGTGCTTCACTTGGTGCTTGCATTGAGGGGTGTTACAATTAAAAGGGATGTGCCTCCTGAATTTGTGGTCCATGTCAATAGTGAATATCCAGGCTGTTTTGCTAAGGTGGCAGCATTTTGA	543	0.4199	MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGVTIKRDVPPEFVVHVNSEYPGCFAKVAAF	180

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car06g02207	180	Gene3D	-	1	77	-	-
	Car06g02207	180	Gene3D	-	78	161	-	-
	Car06g02207	180	ProSiteProfiles	Ubiquitin domain profile.	1	76	IPR000626	GO:0005515
	Car06g02207	180	Pfam	Ubiquitin family	79	150	IPR000626	GO:0005515
	Car06g02207	180	Pfam	Ubiquitin family	3	74	IPR000626	GO:0005515
	Car06g02207	180	CDD	Ubl_NEDD8	79	151	IPR038738	-
	Car06g02207	180	ProSiteProfiles	Ubiquitin domain profile.	77	152	IPR000626	GO:0005515
	Car06g02207	180	SUPERFAMILY	Ubiquitin-like	78	151	IPR029071	-
	Car06g02207	180	PRINTS	Ubiquitin signature	11	31	IPR019956	-
	Car06g02207	180	PRINTS	Ubiquitin signature	53	74	IPR019956	-
	Car06g02207	180	PRINTS	Ubiquitin signature	32	52	IPR019956	-
	Car06g02207	180	SUPERFAMILY	Ubiquitin-like	1	76	IPR029071	-
	Car06g02207	180	ProSitePatterns	Ubiquitin domain signature.	103	128	IPR019954	-
	Car06g02207	180	CDD	Ubl_ubiquitin	1	76	-	-
	Car06g02207	180	PANTHER	-	1	151	-	-
	Car06g02207	180	SMART	ubq_7	77	148	IPR000626	GO:0005515
	Car06g02207	180	SMART	ubq_7	1	72	IPR000626	GO:0005515
	Car06g02207	180	ProSitePatterns	Ubiquitin domain signature.	27	52	IPR019954	-
	Car06g02207	180	PANTHER	UBIQUITIN	1	151	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car06g02207	Car-Chr6	22618813	22624242	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car06g02207	1	76	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	100.000	9.26e-50	155

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car06g02207	K12158		-	gmx:100800163	286.96