Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02198 ATGAGTTCAAGATTGACTGGGAAGGTGAAATGGTTCAACGATCAGAAGGGGTTTGGTTTCATTACCCCTGATGATGGTAGCGAGGAACTTTTCGTTCATCAATCTCAGATTCGATCTGATGGTTTTCGTTCCCTTGCTGAAGGAGAGTCCGTTGAGTTCGAAATTGCTTCTGACAACGATGGACGATCCAAGGCTGTTGAAGTGACTGGCCCTGATGGTGCTAATGTCCAGGGAACAAGAggcggcggcggtggcggtcgtggtggctacggaggtggcggtggcggttatggtggtggtggctacagcggtggcggcggaggaggttatggtggtagcaggagcggtggatacggtagcggtgggggtggttatggtggcggtggcggatatggtggtggacgtggaggtggacgtggtggaggcggcggtggggcctgttataactgtggtgaatctggtcacatggcgagggattgtagccagggtggaagtggtggtggaggtggtggaaggtacagcggcggcggtggaggcggtggcgctggcggtggAAGCTGCTACAGCTGTGGAGAATCTGGTCATTTTGCCAGAGATTGCCCAACCAGTGCCCGTTAG 618 0.233 MSSRLTGKVKWFNDQKGFGFITPDDGSEELFVHQSQIRSDGFRSLAEGESVEFEIASDNDGRSKAVEVTGPDGANVQGTRGGGGGGRGGYGGGGGGYGGGGYSGGGGGGYGGSRSGGYGSGGGGYGGGGGYGGGRGGGRGGGGGGACYNCGESGHMARDCSQGGSGGGGGGRYSGGGGGGGAGGGSCYSCGESGHFARDCPTSAR 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02198 205 Pfam Zinc knuckle 186 201 IPR001878 GO:0003676|GO:0008270
Car06g02198 205 Pfam Zinc knuckle 146 162 IPR001878 GO:0003676|GO:0008270
Car06g02198 205 SMART csp_8 6 71 IPR011129 GO:0003676
Car06g02198 205 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 112 - -
Car06g02198 205 PANTHER COLD SHOCK DOMAIN PROTEIN 2 112 205 - -
Car06g02198 205 MobiDBLite consensus disorder prediction 161 183 - -
Car06g02198 205 SMART c2hcfinal6 146 162 IPR001878 GO:0003676|GO:0008270
Car06g02198 205 SMART c2hcfinal6 186 202 IPR001878 GO:0003676|GO:0008270
Car06g02198 205 PANTHER COLD SHOCK PROTEIN 2 1 112 - -
Car06g02198 205 PANTHER COLD SHOCK PROTEIN 2 112 205 - -
Car06g02198 205 MobiDBLite consensus disorder prediction 68 87 - -
Car06g02198 205 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Car06g02198 205 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Car06g02198 205 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Car06g02198 205 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Car06g02198 205 ProSiteProfiles Zinc finger CCHC-type profile. 147 162 IPR001878 GO:0003676|GO:0008270
Car06g02198 205 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Car06g02198 205 CDD CSP_CDS 6 70 IPR002059 GO:0003676
Car06g02198 205 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Car06g02198 205 SUPERFAMILY Retrovirus zinc finger-like domains 137 203 IPR036875 GO:0003676|GO:0008270
Car06g02198 205 Gene3D - 138 169 - -
Car06g02198 205 Gene3D - 182 205 - -
Car06g02198 205 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Car06g02198 205 ProSiteProfiles Zinc finger CCHC-type profile. 187 201 IPR001878 GO:0003676|GO:0008270
Car06g02198 205 Gene3D - 1 81 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02198 Car-Chr6 22497393 22499543 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Car06g02198 CSD 1.7e-27 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02198 - - cam:101490833 164.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02198 06 22497393 22499543 Car06g02198 06 22497393 22499543 ECH