Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02181 ATGAATATTGAAGTGAAAAAGAAGTACGAGTTCTTGGAGTCCATAAGTGCAATAATGGATGCTCATCTGAGATACTTTAAACTGGGCTACGACTTACTAAGCCAAATGGAGCCTTATATTCACCAGGTGCTAACATATGCTCAACAATCTAAAGAACTGGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATCCAGGAATACAGAACACAGGCAGAGCTGGAAAATGCACGAGCTTCTAGCAGCAATACTGATTCCATGCCAGGTGCTGATAGCACCCATCCTGTACGTTTGAATTCTTATAAAAGCTTTGAAGCAGGGATGCAGTCTGCAACCAAAGGCGAGGTTCAAACAGTTAAACAAGGCTATCTGTTAAAACGATCATCAAGGACGCGGGGAGATTGGAAAAGGCGGTTTTTTGTTCTTGATAACCAAGGGAGTTTATATTACTACAGAGCGAAAGGACCCAAACCCTCGGGATTTCAGTCATATAATTATAGTCGTCTTTCCGAACAAAATAGTGGCATGTTTGGTAGATTCCGTGCAAAGCATAATAGGGCCGCGTCACTAAATGAAGATATTTTGGGTAGTTGTGCAGTTGATCTGTGCACATCCACTATAAAGATGGACGCAGAGGATACAGATCTACGACTTTGCTTCCGTATTATTTCTCCCTCAAAATCATATACACTACAGGCTGAAAATGAAGTTGATAGGATGGACTGGGTAAACAAAATTACTGGAGCTATCACCTCTCTTTTTAATTTTCAGTTTCTTCAACAGCCTCATTACGGTAAATTGCAATTAGAAAATAAAAACTCAGCAATTGGTTCTTCTTTGACAAGTCAACAAGAGGATAGTAATAAATCTTTGATGGATGATGTATTTTCCGAAGAAGGAGGTAGTGTCTCTAATATTTTAAGGGGAATTCCTGGGAATGATAAGTGTGCTGAGTGCAATGCTCCTGAACCAGACTGGGCATCTCTAAACCTTGGTATACTGTTGTGTATTGAATGCTCCGGAGTGCATCGCAATCTTGGAGTTCATATTTCCAAGGTGAGATCTTTAACATTAGATGTGAAGGTTTGGGAACCTACCATTTTGGAGTTATTCAATAACTTGGGTAATGCTTATTGTAATTCTATCTGGGAGGGCTTGCTTCTACTTGACGATGAAAGAGTAGGTGAATCAAATGTGCCTTTGAAACCATGCTCCACCGATCCCTCCCAATATAAAGAAAAGTACATCCAAGCAAAGTATGTAGAGAAATCACTAATCATCCGAGCAGATATACCTGAAATTCCTTCAGTTTCCACAAAAATATGGCAAGCAGTTCAGGCTATAAATGTACGGGAAGTTTATCGCCTTATTGTAACCTCAACTTCAAATCCGATAAACACAAAATATGACGATGCGGTTCCCAATGCTGATACTGAAGGACATCAGCATGATCCTGAAGCCTGTCTAAGGATTAAAGAGTCTAATGAAACAGAGAGTTGTTTCCGTGGTTGGTCTTTATTACATCTGGCATGTCATTCTGACAGTACACTAATGGTTGAGTTGTTGCTCCAATTTGGTGCCGATATAAACATGCGTGACTATCATGGAAGGACTCCCTTGCACCATTGCATTTCTAGCGGGAAAAATCCATTGGCAAAGTTTTTACTAAGAAGGGGCGCAAAACCGTCAGTTAAAGATGCTGGTGGACATACTGCACTTGAAAGAGCAATGGAAATGGGAGCAATAACTGATGAAGAGCTATTTATCAAGCTTGTTGAATGCCAGTAA 1788 0.4021 MNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQAELENARASSSNTDSMPGADSTHPVRLNSYKSFEAGMQSATKGEVQTVKQGYLLKRSSRTRGDWKRRFFVLDNQGSLYYYRAKGPKPSGFQSYNYSRLSEQNSGMFGRFRAKHNRAASLNEDILGSCAVDLCTSTIKMDAEDTDLRLCFRIISPSKSYTLQAENEVDRMDWVNKITGAITSLFNFQFLQQPHYGKLQLENKNSAIGSSLTSQQEDSNKSLMDDVFSEEGGSVSNILRGIPGNDKCAECNAPEPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILELFNNLGNAYCNSIWEGLLLLDDERVGESNVPLKPCSTDPSQYKEKYIQAKYVEKSLIIRADIPEIPSVSTKIWQAVQAINVREVYRLIVTSTSNPINTKYDDAVPNADTEGHQHDPEACLRIKESNETESCFRGWSLLHLACHSDSTLMVELLLQFGADINMRDYHGRTPLHHCISSGKNPLAKFLLRRGAKPSVKDAGGHTALERAMEMGAITDEELFIKLVECQ 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02181 595 SMART PH_update 118 253 IPR001849 -
Car06g02181 595 SMART arf_gap_3 301 433 IPR001164 GO:0005096
Car06g02181 595 MobiDBLite consensus disorder prediction 73 90 - -
Car06g02181 595 Pfam Ankyrin repeats (3 copies) 498 566 IPR002110 GO:0005515
Car06g02181 595 ProSiteProfiles Ankyrin repeat region circular profile. 502 533 - -
Car06g02181 595 Coils Coil 51 71 - -
Car06g02181 595 Gene3D Arfaptin homology (AH) domain/BAR domain 1 74 IPR027267 -
Car06g02181 595 CDD ArfGap 305 420 - -
Car06g02181 595 Pfam PH domain 119 250 IPR001849 -
Car06g02181 595 MobiDBLite consensus disorder prediction 73 94 - -
Car06g02181 595 Gene3D - 434 587 IPR036770 -
Car06g02181 595 ProSiteProfiles PH domain profile. 117 251 IPR001849 -
Car06g02181 595 Gene3D - 113 256 IPR011993 -
Car06g02181 595 ProSiteProfiles ARF GTPase-activating proteins domain profile. 301 433 IPR001164 GO:0005096
Car06g02181 595 SUPERFAMILY ArfGap/RecO-like zinc finger 305 426 IPR037278 -
Car06g02181 595 Pfam Putative GTPase activating protein for Arf 306 425 IPR001164 GO:0005096
Car06g02181 595 PRINTS HIV Rev interacting protein signature 332 349 IPR001164 GO:0005096
Car06g02181 595 PRINTS HIV Rev interacting protein signature 355 376 IPR001164 GO:0005096
Car06g02181 595 PRINTS HIV Rev interacting protein signature 313 332 IPR001164 GO:0005096
Car06g02181 595 PANTHER CENTAURIN/ARF 1 591 IPR045258 GO:0005096
Car06g02181 595 SMART ANK_2a 535 564 IPR002110 GO:0005515
Car06g02181 595 SMART ANK_2a 502 531 IPR002110 GO:0005515
Car06g02181 595 CDD PH_ACAP 120 255 - -
Car06g02181 595 SUPERFAMILY BAR/IMD domain-like 3 140 IPR027267 -
Car06g02181 595 Gene3D Arf GTPase activating protein 282 430 IPR038508 -
Car06g02181 595 SUPERFAMILY Ankyrin repeat 499 588 IPR036770 -
Car06g02181 595 ProSiteProfiles Ankyrin repeat region circular profile. 535 566 - -
Car06g02181 595 ProSiteProfiles Ankyrin repeat profile. 535 567 IPR002110 GO:0005515
Car06g02181 595 ProSiteProfiles Ankyrin repeat profile. 502 534 IPR002110 GO:0005515
Car06g02181 595 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 1 591 - -
Car06g02181 595 SUPERFAMILY PH domain-like 118 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02181 Car-Chr6 22285359 22293739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02181 311 430 C2H2 Transcription Factor Family AT3G07940 39.669 5.89e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02181 K12489 - gmx:100796740 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02181 06 22285359 22293739 Car06g02181 06 22285359 22293739 ECH