Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car06g02180 | ATGTCGTTATCCATGTCCATTTCACCACCTCAATCCGAAGGCAAGAAGAAGAAAAACCGCAACAAACATGGCGAACAAGAAGATTCAACAGATCAACAAAACAACAAAGAAGAATTCATGATCAAACCTCAGCAGGTAACACCTTCCATCGACACTTCAAGTTGGCCGATACTCTTGAAAAATTATGACCGGCTTAATGTCCGTACCGGTCACTACACCCCCCTTCCCTCCGGTCACTCACCCCTCAAACGTCCCCTTGTTGAATACCTCAAATACGGTGTCCTTAACCTTGATAAGCCTGCAAACCCTTCTTCCCATGAAGTTGTTGCTTGGATCAAGCGCATTCTTCGTGTTGAAAAAACCGGTCACAGTGGCACTCTTGATCCTAAAGTCACTGGTAATTTAATTGTTTGTATTGATAGAGCTACCAGACTTGTTAAATCTCAACAAGGTGCTGGTAAAGAGTATGTTTGCATTGCCAGACTTCATGCTGATGTTCCTGATGTTTCCAAGGTAGCTCGTGCTCTTGAATCCCTAACTGGTGCTGTTTTTCAAAGGCCACCTTTGATTTCTGCTGTTAAGAGACAACTTAGGATTAGAACTGTTTATGAAAGTAAGTTGCTTGAATATGATGCTGAGAGACATTTAGTTGTCTTTTGGATTTCGTGTGAGGCAGGTACTTATGTTAGGACTATGTGTGTTCATTTGGGTTTGGTTCTTGGTGTTGGTGGTCATATGCAAGAGCTTAGGAGGGTTAGATCTGGGATTATGGGTGAGAAGGATAATATGGTTTCTATGCATGATGTTATGGATGCTCAATCGGTTTATGATAATTTCCGTGATGAGACTTATTTGAGGAGGGTTGTTATGCCTTTAGAGGTTCTTTTGACTAGTTATAAGAGATTGGTTGTTAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCTAAGTTGATGATTCCGGGTTTGCTTAGGTTTGAGAATGATATTGAGGCTGGTGAGGAGGTTGTGCTTATGACTACTAAGGGTGAAGCTATTGCTCTTGGGATTGCTGAGATGACAACTGCTGTTATGGCTACTTGTGATCATGGCATTGTTGCTAAGATTAAGAGGGTTGTTATGGATAGGGATACTTATCCAAGGAAATGGGGTTTGGGTCCTAAGGCTTCAATGAAGAAGAAACTGATTGCTTTAGGGAAGTTGGATAAGCATGGGAAGCCGAATGAGAATACTCCTGAAGAGTGGATGAGGAATGTGGTTTTGCCTGCTGGTGGGGATAGTGTGATTGCGAGTATGGCTGCTGCTCCTGCAACTGAAGGTGGGAAGAATGAGGTTGACGGGGAAGGGAAGAAAAGAAAGAAACATGAAACTGACGATAGCCCTGCTCCTGCCaagaaggcaaaagttgaaaatgaagaaaaagtgaagacaaagaaagtagaagaagcggatgcagaggtcgaagatgagaagaaagagaagaagaagaaaaagaagaaggataaagagaacgcagatgaaaaagaagagaaagaagtggaggagaaggttgaaaaggagaagaaaaagaagcacaaggacaaggctgaagatgttacacccgaagtggagaagtcggagaagaaaaagaagaagaagGACAAAGATGCTGCTGAGATTAGTAACGGAAAGGACGAGAGTAATGCTGATCGGAGTGACAAGAAGCACAAGAAAAAGAAAAACAAAGACACCCCGGAAGAATAA | 1743 | 0.3666 | MSLSMSISPPQSEGKKKKNRNKHGEQEDSTDQQNNKEEFMIKPQQVTPSIDTSSWPILLKNYDRLNVRTGHYTPLPSGHSPLKRPLVEYLKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHADVPDVSKVARALESLTGAVFQRPPLISAVKRQLRIRTVYESKLLEYDAERHLVVFWISCEAGTYVRTMCVHLGLVLGVGGHMQELRRVRSGIMGEKDNMVSMHDVMDAQSVYDNFRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPKASMKKKLIALGKLDKHGKPNENTPEEWMRNVVLPAGGDSVIASMAAAPATEGGKNEVDGEGKKRKKHETDDSPAPAKKAKVENEEKVKTKKVEEADAEVEDEKKEKKKKKKKDKENADEKEEKEVEEKVEKEKKKKHKDKAEDVTPEVEKSEKKKKKKDKDAAEISNGKDESNADRSDKKHKKKKNKDTPEE | 580 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car06g02180 | 580 | Pfam | tRNA pseudouridylate synthase B C-terminal domain | 230 | 296 | IPR032819 | - | |
Car06g02180 | 580 | SUPERFAMILY | PUA domain-like | 299 | 380 | IPR015947 | - | |
Car06g02180 | 580 | MobiDBLite | consensus disorder prediction | 443 | 580 | - | - | |
Car06g02180 | 580 | Pfam | PUA domain | 300 | 372 | IPR002478 | GO:0003723 | |
Car06g02180 | 580 | TIGRFAM | unchar_dom_2: uncharacterized domain 2 | 295 | 371 | IPR004521 | GO:0003723 | |
Car06g02180 | 580 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Car06g02180 | 580 | SUPERFAMILY | Pseudouridine synthase | 52 | 297 | IPR020103 | GO:0001522|GO:0003723|GO:0009451|GO:0009982 | |
Car06g02180 | 580 | ProSiteProfiles | PUA domain profile. | 299 | 374 | - | - | |
Car06g02180 | 580 | Gene3D | Pseudouridine synthase | 85 | 291 | - | - | |
Car06g02180 | 580 | MobiDBLite | consensus disorder prediction | 13 | 35 | - | - | |
Car06g02180 | 580 | CDD | PseudoU_synth_hDyskerin | 91 | 273 | - | - | |
Car06g02180 | 580 | PANTHER | H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 | 11 | 579 | - | - | |
Car06g02180 | 580 | PANTHER | CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 | 11 | 579 | IPR004802 | GO:0006396 | |
Car06g02180 | 580 | SMART | pua_5 | 300 | 374 | IPR002478 | GO:0003723 | |
Car06g02180 | 580 | Coils | Coil | 466 | 530 | - | - | |
Car06g02180 | 580 | MobiDBLite | consensus disorder prediction | 434 | 580 | - | - | |
Car06g02180 | 580 | Pfam | DKCLD (NUC011) domain | 52 | 109 | IPR012960 | - | |
Car06g02180 | 580 | SMART | DKCLD_2 | 51 | 109 | IPR012960 | - | |
Car06g02180 | 580 | Pfam | TruB family pseudouridylate synthase (N terminal domain) | 113 | 229 | IPR002501 | GO:0006396 | |
Car06g02180 | 580 | Gene3D | PUA domain | 52 | 383 | IPR036974 | GO:0003723 | |
Car06g02180 | 580 | TIGRFAM | CBF5: putative rRNA pseudouridine synthase | 59 | 384 | IPR004802 | GO:0006396 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Car06g02180 | Car-Chr6 | 22272095 | 22274241 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Car06g02180 | 12 | 468 | NAC Transcription Factor Family | AT3G57150 | 80.610 | 0.0 | 732 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car06g02180 | K11131 | - | gmx:100806355 | 785.408 |