Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02180 ATGTCGTTATCCATGTCCATTTCACCACCTCAATCCGAAGGCAAGAAGAAGAAAAACCGCAACAAACATGGCGAACAAGAAGATTCAACAGATCAACAAAACAACAAAGAAGAATTCATGATCAAACCTCAGCAGGTAACACCTTCCATCGACACTTCAAGTTGGCCGATACTCTTGAAAAATTATGACCGGCTTAATGTCCGTACCGGTCACTACACCCCCCTTCCCTCCGGTCACTCACCCCTCAAACGTCCCCTTGTTGAATACCTCAAATACGGTGTCCTTAACCTTGATAAGCCTGCAAACCCTTCTTCCCATGAAGTTGTTGCTTGGATCAAGCGCATTCTTCGTGTTGAAAAAACCGGTCACAGTGGCACTCTTGATCCTAAAGTCACTGGTAATTTAATTGTTTGTATTGATAGAGCTACCAGACTTGTTAAATCTCAACAAGGTGCTGGTAAAGAGTATGTTTGCATTGCCAGACTTCATGCTGATGTTCCTGATGTTTCCAAGGTAGCTCGTGCTCTTGAATCCCTAACTGGTGCTGTTTTTCAAAGGCCACCTTTGATTTCTGCTGTTAAGAGACAACTTAGGATTAGAACTGTTTATGAAAGTAAGTTGCTTGAATATGATGCTGAGAGACATTTAGTTGTCTTTTGGATTTCGTGTGAGGCAGGTACTTATGTTAGGACTATGTGTGTTCATTTGGGTTTGGTTCTTGGTGTTGGTGGTCATATGCAAGAGCTTAGGAGGGTTAGATCTGGGATTATGGGTGAGAAGGATAATATGGTTTCTATGCATGATGTTATGGATGCTCAATCGGTTTATGATAATTTCCGTGATGAGACTTATTTGAGGAGGGTTGTTATGCCTTTAGAGGTTCTTTTGACTAGTTATAAGAGATTGGTTGTTAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCTAAGTTGATGATTCCGGGTTTGCTTAGGTTTGAGAATGATATTGAGGCTGGTGAGGAGGTTGTGCTTATGACTACTAAGGGTGAAGCTATTGCTCTTGGGATTGCTGAGATGACAACTGCTGTTATGGCTACTTGTGATCATGGCATTGTTGCTAAGATTAAGAGGGTTGTTATGGATAGGGATACTTATCCAAGGAAATGGGGTTTGGGTCCTAAGGCTTCAATGAAGAAGAAACTGATTGCTTTAGGGAAGTTGGATAAGCATGGGAAGCCGAATGAGAATACTCCTGAAGAGTGGATGAGGAATGTGGTTTTGCCTGCTGGTGGGGATAGTGTGATTGCGAGTATGGCTGCTGCTCCTGCAACTGAAGGTGGGAAGAATGAGGTTGACGGGGAAGGGAAGAAAAGAAAGAAACATGAAACTGACGATAGCCCTGCTCCTGCCaagaaggcaaaagttgaaaatgaagaaaaagtgaagacaaagaaagtagaagaagcggatgcagaggtcgaagatgagaagaaagagaagaagaagaaaaagaagaaggataaagagaacgcagatgaaaaagaagagaaagaagtggaggagaaggttgaaaaggagaagaaaaagaagcacaaggacaaggctgaagatgttacacccgaagtggagaagtcggagaagaaaaagaagaagaagGACAAAGATGCTGCTGAGATTAGTAACGGAAAGGACGAGAGTAATGCTGATCGGAGTGACAAGAAGCACAAGAAAAAGAAAAACAAAGACACCCCGGAAGAATAA 1743 0.3666 MSLSMSISPPQSEGKKKKNRNKHGEQEDSTDQQNNKEEFMIKPQQVTPSIDTSSWPILLKNYDRLNVRTGHYTPLPSGHSPLKRPLVEYLKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHADVPDVSKVARALESLTGAVFQRPPLISAVKRQLRIRTVYESKLLEYDAERHLVVFWISCEAGTYVRTMCVHLGLVLGVGGHMQELRRVRSGIMGEKDNMVSMHDVMDAQSVYDNFRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPKASMKKKLIALGKLDKHGKPNENTPEEWMRNVVLPAGGDSVIASMAAAPATEGGKNEVDGEGKKRKKHETDDSPAPAKKAKVENEEKVKTKKVEEADAEVEDEKKEKKKKKKKDKENADEKEEKEVEEKVEKEKKKKHKDKAEDVTPEVEKSEKKKKKKDKDAAEISNGKDESNADRSDKKHKKKKNKDTPEE 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02180 580 Pfam tRNA pseudouridylate synthase B C-terminal domain 230 296 IPR032819 -
Car06g02180 580 SUPERFAMILY PUA domain-like 299 380 IPR015947 -
Car06g02180 580 MobiDBLite consensus disorder prediction 443 580 - -
Car06g02180 580 Pfam PUA domain 300 372 IPR002478 GO:0003723
Car06g02180 580 TIGRFAM unchar_dom_2: uncharacterized domain 2 295 371 IPR004521 GO:0003723
Car06g02180 580 MobiDBLite consensus disorder prediction 1 42 - -
Car06g02180 580 SUPERFAMILY Pseudouridine synthase 52 297 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Car06g02180 580 ProSiteProfiles PUA domain profile. 299 374 - -
Car06g02180 580 Gene3D Pseudouridine synthase 85 291 - -
Car06g02180 580 MobiDBLite consensus disorder prediction 13 35 - -
Car06g02180 580 CDD PseudoU_synth_hDyskerin 91 273 - -
Car06g02180 580 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 11 579 - -
Car06g02180 580 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 11 579 IPR004802 GO:0006396
Car06g02180 580 SMART pua_5 300 374 IPR002478 GO:0003723
Car06g02180 580 Coils Coil 466 530 - -
Car06g02180 580 MobiDBLite consensus disorder prediction 434 580 - -
Car06g02180 580 Pfam DKCLD (NUC011) domain 52 109 IPR012960 -
Car06g02180 580 SMART DKCLD_2 51 109 IPR012960 -
Car06g02180 580 Pfam TruB family pseudouridylate synthase (N terminal domain) 113 229 IPR002501 GO:0006396
Car06g02180 580 Gene3D PUA domain 52 383 IPR036974 GO:0003723
Car06g02180 580 TIGRFAM CBF5: putative rRNA pseudouridine synthase 59 384 IPR004802 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02180 Car-Chr6 22272095 22274241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02180 12 468 NAC Transcription Factor Family AT3G57150 80.610 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02180 K11131 - gmx:100806355 785.408