Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02172 ATGAGCTCTCGGACAAGCAGGGTGCCTGCTGTTAGAAGTTACCGGCGGAGGAAGGCAGTTTTGGACCTTGACCTTAACCGAGTACCGGCTGGTGACAATCCGGCTGGTGAAAATCGCGAGCAGGAGGGACCTTCCACTCAGTTGGGGCCTCAAGAAGTAGAAGTTCAAGCTAACCAGCAACCGCTAATTGTACAACTACCACCTCCCATGATTGATGTGGAGGCCATTGATGATGATGTTATTGAATCATCCCCAAGGGCTTTTGCTGAGGCTAAAAACAATTCAAGAAGAAATCGTGGGAGGACTATAGTTGATGTGGATTTAGAGGAGCAGAGTAGGGTAATCAACAATAATCGCAACAAACGAAGGAGAGAACCTCCAAATCAATCAATTATTAATTGTGATCTTTATATAAATTTGGAAGGCGGTAGCAGCTCTACGTTGGAAAGTGTCAAAAAGCCACCTGAGCCTCCAAAGGAACCTGTCTTCAGTTGTCCAATATGTATGGGCCCTTTGGTGGAAGAAATGTCGACAAGGTGTGGTCATATATTTTGCAAGACTTGTATCAAGGCTGCTATAAGTGCTCAGGCTAAATGTCCTACCTGTAGAAAAAAGATTACTGTGAAAGAGCTCATAAGGGTGTTTCTCCCAACAACTGGTTGA 663 0.4495 MSSRTSRVPAVRSYRRRKAVLDLDLNRVPAGDNPAGENREQEGPSTQLGPQEVEVQANQQPLIVQLPPPMIDVEAIDDDVIESSPRAFAEAKNNSRRNRGRTIVDVDLEEQSRVINNNRNKRRREPPNQSIINCDLYINLEGGSSSTLESVKKPPEPPKEPVFSCPICMGPLVEEMSTRCGHIFCKTCIKAAISAQAKCPTCRKKITVKELIRVFLPTTG 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02172 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 218 IPR013083 -
Car06g02172 220 Pfam Zinc finger, C3HC4 type (RING finger) 165 202 - -
Car06g02172 220 PANTHER ELFLESS, ISOFORM B 3 219 - -
Car06g02172 220 SMART ring_2 165 202 IPR001841 -
Car06g02172 220 PANTHER RING ZINC FINGER-RELATED 3 219 - -
Car06g02172 220 ProSiteProfiles Zinc finger RING-type profile. 165 203 IPR001841 -
Car06g02172 220 SUPERFAMILY RING/U-box 164 209 - -
Car06g02172 220 MobiDBLite consensus disorder prediction 23 50 - -
Car06g02172 220 ProSitePatterns Zinc finger RING-type signature. 180 189 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02172 Car-Chr6 22205789 22211685 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02172 1 219 C3H Transcription Factor Family AT5G48655 52.489 3.41e-56 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02172 K22651 - gmx:100306616 291.582