Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02145 ATGGAAAAAGAGGATCAGGATTTGATAGAATTAATCAATTCAGAAGATGACAAATACTCTACTAACTCCACAATCACAAAACAACACTTTTCTGTTTTAACTGAATCTCACATAAAACACCTTCAACATTCTCACATCAATCAAATTTTATCAATTCTTCCAATTTCAAAACCTGTTGCATCCCTTTTACTCTCTCACTACCATTGGAACGTCGCTCAAGTATTGGAGTCATGGTTTTCTAACCATGAAAAAGTCCTAAAAACCATAGGGTTATCGAATCAACCCAAATCAGAACTAGAATTAGGGTTTCATAATTCACAAATTATCACATGTGAGATTTGCTTTGAAACCTTTTTTATTGATAAGATTAGGTCATCATGGTGCGGTCATCCATTTTGTATCAATTGTTGGAAACAATATGTGGATACAAATATTGATGATAAGAATTGCTTCAATCTTAGATGCCCTAAACCTAATTGTGATGCTGCTGTTGATGAAGACATGATTCATCAACTTGCAAGTGAGTCGAGAAAGATAAAATATGATCGATTTTTCTTTCGATCTTTCGTGGAAAACAACAATGATACGGACATTAAGTGGTGTCCTAATCCAGGGTGTGGTTATGCTATAAGATATGAATTACCAGATGATCATGATTTTGGATCTAGGATTAATTATGATGTTACATGTTTATGTGATTATAGTTTTTGTTGGGATTGTGAGCAAGAGGCTCATACTCCTGTGGATTGTGAAACTGTTGCTAAATGGATGGAAAAGAGTAGCTCTGATTATTCTGAACTTGAGATTATTACTAGTAAGGGTTGGATTGTTGCTAACACAAAACCATGTCCTAATTGCAAGATGCCCATCGAGAAAAACAAAGGTTGTAGAGTTATGACATGCAAATGTAGGTTCCAATTTTGCTGGTTATGTCTCTATGGTTTGTCTAGTTGTCGCACCACATGTCGCAAGGGTTTCAACAACATCCAAGGTAAGGTATTTCAAGAGAAAGTTGGAGATAAAATGCAAAGAATCGATGAAAAAACGAATTTGGATAGGTTCATGTACTACCACCAACTTTGGTCTAGCAATGAAATTTCAAGAAAAAATGCACTTCAAAATTTGATTGATATCAGTACTAGTAGTAATCAGTATATAAAGAGGATGAGTTTATCATGGAAAAAGCCTGAAAAATATTTTGATTTCATAAAAGATGCATGGAAACAGGTAGTTGAATGTAGAAGAATTCTCAAATGGGGTTATGTATATGTATACAATCTTCCTCAGGatgaaagtgctaaggttgagtttcttgaccacatccaaggcatagctcaagttactttggataagcttcatcggcttgctgaaaatgaatcgagaaagtttctACAAGTTGGGTTAGAAAAAGAACTTAATGATTTTCGTGTGAACTTAATCACTTTGACCAAGGTGACTAAAAATCATGTTATGAAATTGGTTAAAGAATTAGAGAATGGTTTAGCTGTTGTGCCTATGAAAAGGAGGTCAAGTGAAATTGACAACGACTCATTTAAAAAACAAAAAACAACGCGAGAAACACAATCAAACGTGATGGAATTAACTTGA 1608 0.319 MEKEDQDLIELINSEDDKYSTNSTITKQHFSVLTESHIKHLQHSHINQILSILPISKPVASLLLSHYHWNVAQVLESWFSNHEKVLKTIGLSNQPKSELELGFHNSQIITCEICFETFFIDKIRSSWCGHPFCINCWKQYVDTNIDDKNCFNLRCPKPNCDAAVDEDMIHQLASESRKIKYDRFFFRSFVENNNDTDIKWCPNPGCGYAIRYELPDDHDFGSRINYDVTCLCDYSFCWDCEQEAHTPVDCETVAKWMEKSSSDYSELEIITSKGWIVANTKPCPNCKMPIEKNKGCRVMTCKCRFQFCWLCLYGLSSCRTTCRKGFNNIQGKVFQEKVGDKMQRIDEKTNLDRFMYYHQLWSSNEISRKNALQNLIDISTSSNQYIKRMSLSWKKPEKYFDFIKDAWKQVVECRRILKWGYVYVYNLPQDESAKVEFLDHIQGIAQVTLDKLHRLAENESRKFLQVGLEKELNDFRVNLITLTKVTKNHVMKLVKELENGLAVVPMKRRSSEIDNDSFKKQKTTRETQSNVMELT 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02145 535 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 27 514 - -
Car06g02145 535 CDD RING-HC_RBR_TRIAD1_like 111 160 - -
Car06g02145 535 Gene3D - 251 503 - -
Car06g02145 535 SUPERFAMILY RING/U-box 189 257 - -
Car06g02145 535 SUPERFAMILY RING/U-box 105 194 - -
Car06g02145 535 ProSiteProfiles Zinc finger RING-type profile. 111 156 IPR001841 -
Car06g02145 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 193 IPR013083 -
Car06g02145 535 SUPERFAMILY RING/U-box 275 319 - -
Car06g02145 535 Pfam IBR domain, a half RING-finger domain 180 250 IPR002867 -
Car06g02145 535 Pfam IBR domain, a half RING-finger domain 278 313 IPR002867 -
Car06g02145 535 Gene3D - 200 250 - -
Car06g02145 535 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 27 514 IPR031127 GO:0004842|GO:0016567
Car06g02145 535 ProSiteProfiles TRIAD supradomain profile. 107 332 IPR044066 -
Car06g02145 535 MobiDBLite consensus disorder prediction 513 535 - -
Car06g02145 535 SMART ibrneu5 179 250 IPR002867 -
Car06g02145 535 SMART ibrneu5 265 318 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02145 Car-Chr6 21885395 21887009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02145 27 504 ARIADNE family AT1G65430 43.004 6.15e-132 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02145 K11968 - cpap:110812930 437.187