Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02126 ATGGATTGTACAGCTGCTCGAAAGACACAGAAGGCTGATCGAGAAAAGTTAAGGAGGGATCGTCTAAATGAACAGTTTGTAGAACTGGGTAACATTTTAGACCCTGATAGGCCCAAAAATGATAAAGCAACCATTCTAGGTGATACAGTTCAATTGCTGAAGGACCTTACTTCTCAAGTTAGTAAACTAAAAGATGAGCACACTATGCTAAATGAAGAATCTCGAGAGTTGACTCAGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCAGATATCGAGAATTTGAATAACCAGTATCAGCTGCAACTCAGAACTATGTTTCCATGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCGTCATATCCGTATCCAGTTCCAATGCCGGTACCTCCTGGACCAATTCCCATGCAGCCGTACCCCTTCTACGCTAATCAACATCCTGCAGTCATCCCTAACCCCTGTTCAACATACGTTCCATTTTTAGCCCCTAATACAATCGTTGAACAGCAATCCACCCAATACGTATCCCCACCTCTTCATCCAGGTAGCCGGTCCCATGTATCAGGAAAACAAGATTCTAAAAACAAATCATCCAGGGAGAGCAGGGCTGAAAGAAATGAGGAATCTAATGATGTAGCCACGGACCTTGAGTTGAAGACTCCCGGGTCTTCTGCAGACCAGGATTTATCGTCCGCACAAAAGAAATCGAGCAAGTCATCGAGAAAGGAAAGCAGTTTCACAGAAGGTAGTTCGTTAGGCAAGTGTTCTTCATCGTACAGCGTTCAGGATAGCTCATCAAGTAGTGTAGTTGGGAGCAGAAAGGCTAGTGAATGA 849 0.4358 MDCTAARKTQKADREKLRRDRLNEQFVELGNILDPDRPKNDKATILGDTVQLLKDLTSQVSKLKDEHTMLNEESRELTQEKNDLREEKASLKSDIENLNNQYQLQLRTMFPWTAMDHSVMMAPPSYPYPVPMPVPPGPIPMQPYPFYANQHPAVIPNPCSTYVPFLAPNTIVEQQSTQYVSPPLHPGSRSHVSGKQDSKNKSSRESRAERNEESNDVATDLELKTPGSSADQDLSSAQKKSSKSSRKESSFTEGSSLGKCSSSYSVQDSSSSSVVGSRKASE 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02126 282 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Car06g02126 282 MobiDBLite consensus disorder prediction 177 282 - -
Car06g02126 282 Coils Coil 5 25 - -
Car06g02126 282 MobiDBLite consensus disorder prediction 221 239 - -
Car06g02126 282 Coils Coil 53 108 - -
Car06g02126 282 Gene3D - 5 89 IPR036638 GO:0046983
Car06g02126 282 MobiDBLite consensus disorder prediction 192 219 - -
Car06g02126 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Car06g02126 282 SMART finulus 12 62 IPR011598 GO:0046983
Car06g02126 282 MobiDBLite consensus disorder prediction 248 282 - -
Car06g02126 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 76 IPR036638 GO:0046983
Car06g02126 282 PANTHER TRANSCRIPTION FACTOR BHLH121 1 280 IPR044579 GO:0003700|GO:0055072
Car06g02126 282 CDD bHLH_AtILR3_like 11 85 - -
Car06g02126 282 PANTHER TRANSCRIPTION FACTOR BHLH121 1 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02126 Car-Chr6 21675106 21679927 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02126 4 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 63.052 1.27e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car06g02126 HLH 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02126 - - cam:101491902 426.017