Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02109 ATGGctttctttcttttctttttcctcttctttcttgcttCATCAGCCACCGCTTGTGATCGTTGTGTGCACCAATCCAAGGCTTCCTATTTCTCCAAAGTTTCTGCTCTCTCATCTGGGGCATGTGGGTATGGTTCTTTAGCATTGGACTTTAGTGGTGGACAACTTGCAGCTGGTGTTTCTTCACTTTTCTATGATGGAGCTGCTTGTGGTGCTTGCTTTCAGGTAAGATGCAAGAACCAAGGTTTATGCACAAAAGAAGGTACAAGAGTGGTATTGACTGATCTTAATCACAATAATGAAACTGACTTTGTTCTAAGTAGTAGAGCCTTCAAGGCAATGGCTCAAAAGGGTATGAGCCAACAAATTTTGAAGCTTGGCATTGTTGATATTGAATATAAGAGGTAA 408 0.3824 MAFFLFFFLFFLASSATACDRCVHQSKASYFSKVSALSSGACGYGSLALDFSGGQLAAGVSSLFYDGAACGACFQVRCKNQGLCTKEGTRVVLTDLNHNNETDFVLSSRAFKAMAQKGMSQQILKLGIVDIEYKR 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02109 135 PANTHER EXPANSIN-B3 5 135 - -
Car06g02109 135 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 135 IPR007112 -
Car06g02109 135 PANTHER EXPANSIN-LIKE A1-RELATED 5 135 - -
Car06g02109 135 SUPERFAMILY Barwin-like endoglucanases 8 135 IPR036908 -
Car06g02109 135 Pfam Lytic transglycolase 57 133 IPR009009 -
Car06g02109 135 Gene3D - 12 135 IPR036908 -
Car06g02109 135 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Car06g02109 135 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Car06g02109 135 PRINTS Expansin/Lol pI family signature 126 135 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02109 Car-Chr6 21538779 21540932 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02109 3 135 Expansin Gene Family AT3G45960 58.519 6.44e-42 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02109 - - gmx:100819849 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02109 06 21538779 21540932 Car06g02109 06 21538779 21540932 ECH