Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02107 ATGCTTCAAAGCTTGGTCCCTCTACCTCCTCTCACTTCAAAACCTAATAACTCAATGAAGGCCAAACGCGCCGAACGCGAACACGACGACGCTGATTCCAACGTTCAGGAGCCTTCCTTCAAGAGACCCAACTACTCCTCCGAGAAGACGGTGGCGGAAGGAGAGGGACACGAGGAGGTTCAAGCTTTTGAACCTCAAATTGAAGGCGAATCAACTGGTCTCAAACTTCTAGGGCTTTTACTCCAATGCGCTGAATGCGTCGCCATGGATAACCTCGATTTCGCCAACGACCTCTTGCCGGAGATCACTGAACTCTCTTCACCGTTCGGAACTTCGCCAGAGCGCGTCGGCGCGTACTTCGCACAGGCGCTGCAAGCGCGAGTGGTCAGTTCTTGCCTCAGCAGTTACTCGCCGTTAACCGCTAAGTCGGTAACCCTAACTCAGTCGCAGAGAATCTTCAACGCGTTCCAATCCTACAACTCTGTTTCACCGTTGGTGAAATTCTCACACTTCACCGCGAATCAAGCAATCTTCCAAGCAGTAGACGGTGAAGATCGCGTCCACATCATCGATCTCGATATCATGCAGGGACTTCAATGGCCAGGATTGTTCCACATATTAGCTTCACGATCCAAGAAGATCCGCTCCGTGAGAATCACTGGTTTTGGCTCCTCCTCAGAGCTTCTAGAATCAACGGGAAGGAGACTCGCCGATTTCGCGAGTTCGCTCGGGCTTCCGTTCGAGTTTCATCCCGTGGAGGGTAAAATCGGAAGTGTAACAGAGCCGAGTCAACTCGGTGTTAGGCCAAACGAAGCGATCGTGGTTCACTGGATGCACCATTGCTTGTACGATATAACTGGTAGCGATTTAGGAACGTTGAGATTGCTGAGTCAGCTTAGGCCAAAGCTAATCACCACCGTTGAACAAGATCTTAGCCACGCTGGTAGCTTCTTAGCGAGGTTTGTGGAGGCTTTGCATTATTACAGCGCGTTGTTCGACGCGCTAGGAGATGGTTTGGGTGCAGACAGTGTTGAGAGGCATTTGGTGGAGCAGCAGCTGTTGGGCTGTGAGATAAGGAACATTATCGCCGTGGGTGGGCCCAAGAGGACTGGAGAGGTTAAAGTTGAGAGATGGGGAGATGAGTTGAAACGGGTCGGGTTTCAACCCGTTTCACTGCGTGGTAACCCGGCTTCACAAGCGAGCTTGTTGTTGGGGATGTTCCCATGGAGAGGGTATACGCTTGTTGAGGAGAATGGTTCTTTGAAGCTCGGTTGGAAGGATCTCTCTTTGTTGATCGCGTCTGCTTGGCAGCCGTCTGATTTGATTACTTACACGGATTGA 1341 0.5123 MLQSLVPLPPLTSKPNNSMKAKRAEREHDDADSNVQEPSFKRPNYSSEKTVAEGEGHEEVQAFEPQIEGESTGLKLLGLLLQCAECVAMDNLDFANDLLPEITELSSPFGTSPERVGAYFAQALQARVVSSCLSSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQAVDGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSVRITGFGSSSELLESTGRRLADFASSLGLPFEFHPVEGKIGSVTEPSQLGVRPNEAIVVHWMHHCLYDITGSDLGTLRLLSQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSVERHLVEQQLLGCEIRNIIAVGGPKRTGEVKVERWGDELKRVGFQPVSLRGNPASQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQPSDLITYTD 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02107 446 Pfam GRAS domain family 78 437 IPR005202 -
Car06g02107 446 PANTHER SCARECROW-LIKE PROTEIN 23 42 438 - -
Car06g02107 446 ProSiteProfiles GRAS family profile. 67 437 IPR005202 -
Car06g02107 446 MobiDBLite consensus disorder prediction 1 54 - -
Car06g02107 446 MobiDBLite consensus disorder prediction 1 18 - -
Car06g02107 446 MobiDBLite consensus disorder prediction 19 36 - -
Car06g02107 446 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 42 438 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02107 Car-Chr6 21503336 21505622 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02107 71 440 GRAS Transcription Factor Family AT5G41920 70.933 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Car06g02107 GRAS 2e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02107 - - gmx:100816249 748.429