Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02102 ATGTCACTTTCACCTAGCTTAGGATCTCCCCATCCATGGCTTAGAGAACTGAAATCTGAGGAAAGGGGTTTGTACTTAATCCATTTGTTGCTCACTTGTGCAAATCATGTAGCTGCTTGTAATCTTGAGAATGCAAATGCAACACTTGAGCAAATTTCAATGCTTGCTTCCCCTGATGGGGATACAATGCAGCGAATCGCGGCGTATTTTACCGAAGCACTTGCTGATAGGATACTTCAGACATGGCCTGGTCTTCACAAAGCCCTCAACTCTACTAGAATGGTTATGGTTTCAGAAGAAATTCTTGTGCAAAAGCTCTTCTTTGAGCTTTTCCCTTTCTTGAAGATAGTATTTGTTCTCACAAATCAGGCTATCATTGAAGCAATGGAAGGTGAGAAAATGATTTGTGAACCTGCTCAGTGGATTGCACTACTTCAAGTTTTGAGTGCACGTCCCGAAGGCCCTCCACATTTGAGAATCACCGGTGTTCATCGGAAGAAAGAGGTTCTGGACACAATAGCTCATAGACTGATCGAAGAGGCTGAAAAGTTGGATATACCATTCCAATTCAATCCTGTTGTCAGCAAATTAGAAAACCTCGATTTCGACAAACTTCGTGTTAAAACTGGGGAGGCATTAGCAATTAGTTCTACTCTCCAATTGCATGCCCTTTTAGCCTTTGATGATGAAACCATGAAGAAAAAATCGCCTCTTTTGTTAAAAAGCTCAAATGGAGTTCACTTGCAAAGATTCAAGCCAATGAACCAAAGCACATTAGGCGATTTGCTTGAGAAAGATATGGTTAATGGATATACCAGAAGTCCTGACTCAACCTCATTGTCGCCGGCTTCTTTGAACTCTTCAACTTCAATGAACATGGAAAGTTTTCTCAATGGCTTGTGGTGTTTATCACCAAAAGTCATGGTTGTAACAGAACAAGACTCTAATCATAATGGCTCAACTCTTATGGATAGGTTACTAGAAGCTCTATATTCTTATGCAGCATTATTTGATTGTTTAGAATCCACAGTTTCAAGAACCTCATTGGAGAGATTAAGGGTGGAGAAGATGCTTTTTGGTGAGGAAATCAAGAACATTATAGCATGTGAGGGATATGAGAGAAAGGAAAGACATGAAAAGCTTGATAAGTGGTTTATGAGATTTGATTTAGCTGGATTTGGCAATGTGCCTTTAAGTTATTTTGGTATGTTGCAAGCAAGGAGGTTCATGCAGGGTTATGGTTGTGAGGGATATAGAATGAAGGAAGAAAATGGTTGTGTAGTTATATGTTGGCAAGATAGGTCCTTGTTTTCAGTATCAGCTTGGAGATCTAGGAAGTAA 1341 0.399 MSLSPSLGSPHPWLRELKSEERGLYLIHLLLTCANHVAACNLENANATLEQISMLASPDGDTMQRIAAYFTEALADRILQTWPGLHKALNSTRMVMVSEEILVQKLFFELFPFLKIVFVLTNQAIIEAMEGEKMICEPAQWIALLQVLSARPEGPPHLRITGVHRKKEVLDTIAHRLIEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSTLQLHALLAFDDETMKKKSPLLLKSSNGVHLQRFKPMNQSTLGDLLEKDMVNGYTRSPDSTSLSPASLNSSTSMNMESFLNGLWCLSPKVMVVTEQDSNHNGSTLMDRLLEALYSYAALFDCLESTVSRTSLERLRVEKMLFGEEIKNIIACEGYERKERHEKLDKWFMRFDLAGFGNVPLSYFGMLQARRFMQGYGCEGYRMKEENGCVVICWQDRSLFSVSAWRSRK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02102 446 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 5 235 IPR005202 -
Car06g02102 446 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 293 345 IPR005202 -
Car06g02102 446 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 350 445 IPR005202 -
Car06g02102 446 Pfam GRAS domain family 26 443 IPR005202 -
Car06g02102 446 PANTHER BNAA06G02820D PROTEIN 293 345 IPR030008 GO:0003700|GO:0005634|GO:0009739
Car06g02102 446 PANTHER BNAA06G02820D PROTEIN 350 445 IPR030008 GO:0003700|GO:0005634|GO:0009739
Car06g02102 446 PANTHER BNAA06G02820D PROTEIN 5 235 IPR030008 GO:0003700|GO:0005634|GO:0009739
Car06g02102 446 ProSiteProfiles GRAS family profile. 17 443 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02102 Car-Chr6 21433042 21435334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02102 1 446 GRAS Transcription Factor Family AT1G50420 66.883 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Car06g02102 GRAS 2.3e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02102 - - gmx:100814131 758.829