Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02100 ATGGTGTTTGTGATTCGGCTTTTAATGATGAGGGGTAGTTTGAAGAGAAGAGACTGCATTGATTTGAATTTGGATGTGAATGATGAGGTTGATGTGAATTTTGATGTGAATTTGGGAGGGGAAACTTTGAGGCAGGAATGTGTATTTGATTTGAATGTGGGTGTGTGTGAAGAAGTTAAGGAAGCTCAGGGTTGTGCTGACGGAAATGGGTATTCTGAGGTAGATGGTGTGACGAGGCAGCTGCTAGAAGAAGAGTCGGATGTTAAGCACAGGTCTACGGGAGGTGATGGTGTTCTAGGTAATTTGAATTGTGCCTCTGATGCTATCAAACTGGAGGAGTTTCATGTTTCGGTTGGGCATATAGCTGAAGATGCTTCTTTGTGTTTGATCGAGGAAAAGGAAGGTCATGATGGCAAAGAAAATGTGGCGGCTGTTGACCCTCTTCGGGTTTCGGATGATATTTCTGTTAGGGATTTTGATTATGTTTCCTTTGAAGCCGGTGCTGCCGTAGTTAATGAATACCAAAATGATCCGGGAAGTCTATGCAAACAAGGAAGTAATCAGAGGAAGAGAAGAAAAGTATCAGACAATCTAAAAGCCACTCCGGACACGGCTTTGAGGAGGAGTTCTCGCCGGGCATCAGCTAGAAAACGAGTTTCAAGTGCAGTATCAGTGGAGATGATCGATGATCCTTTGTCGTCCCTGGAAACCAGTGTAACAGAAGAAAAACTTTTGATGCTGGGAAATGAGAAACATGAACAGTGCAATGTTCCTATTCCGAAGCTGCAATTGCCCCCTTCTTCTCAAAATTTGAATTTAGATGACATTCCTGTTCTTGAATTTTTTTCTGTATATTCTTGTTTAAGATCGTTCAGTACCTTGTTATTTTTGAGTCCATTTGAGTTGGAAGATCTTGTAGCTGCACTAAAATCTGAAACCCCCAATGCATTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTGAGAAAGCATTTGGATTTTCTTTCCAATGAGGGTTGCCAATCTGCATCCATTTGCCTGAGGAATCTTAACTGGGATTTCTTGGACTTGATCACATGGCCCATTTTCATGGCCGAGTACCTTCTGATTCATAGTTCACAATTTAAAACTAGTTTTGATGCTAACCTCTCAATGTTCAGAACTGACTACTACAAACAACCTGTAATTTTGAAGCTTGAGATTCTTCAGTACCTGTGTGATGATATGATTGAAGCAGACACCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTAACAGAGACCGGTATGGGTTTTGATCAGAATATTTATTTTGACAAGAAAAAGAGAGCTGTAATGGATGTTTCTGGTGGCTCTTGCTTGACTGAGGAGATTGTGGACAGCACAAATGACTTGAACAGTGATGAATGTTGCCTTTGCAAGATGGATGGTAATTTAATATGTTGTGATGGTTGCCCCTCTGCATTCCACTCAAGGTGTGTCGGGCTTGCAAGTGACAATCTGCCTGAAGGTGACTGGTATTGCCCCGAGTGTGCTATTGGCACGCACCGGGATTGGATGAAATCGCGAAGGTCACTTCGAGGAGCAGACTTGTTGGGAATTGATCCTCATGGCTGTCTTTATTTTGGTAGCTGCGGTTACCTGTTAGTTTCAAACTCATTAGACGCAGGGTCCTTGTTCAAATACTACCATAGAAAGGATATACACGGTGTAATTGAAGTTCTAAAGACTATGGATACTTTTAATCGAGACTTATTAATGGCTATCTACAAGCATTGGGATATTCCGGCTAACTTAAATGCAGGGGCTAGTAACTCCACAGTCTTTAATCAAATTTCCTGCAAGAACATGCAAATGACGGCTGAATATTATGCTAAGCCTACATCTTCAGCACCTCTTACTTCTTCAGAAACTTGTATGGACAAGAATCCGGTTGACAATCAGAAAAAGTTGGAGAAAAATTCAACTATTGACTGTTGTACTCACGATGGCCAAGACTTCCGAAAAGTTGGGAACCAATTAGACTCTGTAACAACAATCGAGAGTCCTTGTATTGCCTCAGAAGGATCAGCTGATACCGCACATATGAGATCAGGCATTGAGAGTGTTCAGATGCACAGGATATATGATTCCATAGGTGTTAGCAGTACCCCTTATACTAACAATAAGGATACATCACAAGCACCTAGTGGGACTGACTACATAAACTATTACAGCTTTGCGAGGGTGGCCTCATTAGTTGCGCAGGAGTTGATGTGTAAGTTACCTGAAAAGAACAATAAGAATATTATAATGACTGAAGAAGAAATAATTTCTGACCAAGCAAAGGCAATCATGAAGATGTCCACCAACTTTTGTTGGCCAAGTATTCAAAACTTGAACTCAGCTGCTCAAAATGAAAAATGCGGGTGGTGCTTTTCTTGCAAGGTTGCAAATGATGACAGAGATTGCTTGTACGTTTCTGTGGTGAAACCTCTTTCTGAAGTGTCTAAAAGTACTTCAGTCGGGCTTCAACCCGGGAAAATCCAGAGTGGACATCTTAGAGAGATAATATGCCATATTTTCTCTCTCGAGGTTCGATTACGGGGTCTTTTATCGGGTCCTTGGTTGAATCTGCATCAAACGAATCTTTGGCATAAGGATCTTTTGAAGACGTCTGATTTTCTTCCTGTTAAACGATTATTGCTTCTTTTGGAATCCAATTTGAGACATCGTGCACTTTCAGCTGATTGGTTGAAGCATGTGGATTCTGTGGCCACTATGGGATCTGCCACTCATATTGTGGTTGGTTCAGCGCGCACATCCTCAAGGCATGGTGTTGGAAGGAAAAGATCCAGGCATTCAAATATTGAATCCAGTTCAGCTTCAAACACTACTGGTGGTTTGGGAATGTATTGGTGGAGAGGTGGTAGGGTTTCCCGAAAGTTGTTTAATTGGAAGGTTTTGCCTCGGTCCTTTATTACCAAAGCCGCTAGACAAGCTGGGCGTACAAAGATACCAGGTATTTTATATCCTGAGAATTCAGATTTTGCAAAGAGAAGCCGGTATGTTGCCTGGCGGGCTTCTGTTGAGATTTCAACAAGTGTTGAGCAGCTTGCTTTACAGGTTAGAGAACTATATTCAAACATAAGGTGGCATGATATTGAGAATAACCATCCTCTATATGTGTTGGACAAGGAATCTAGAAAATCTGTCAGGCTATTCAAAAAGGCAATTGTACGCAGAAAGTGCACAGATGGACAATCAGTGAAATACCTTCTTGATTTTGGGAAGAGAAGGGCTATTCCAGATGTTGTTATTAAACATGGCTCTTTGTTGGAACAACCCTCGAGTGAGAAGAAAAAGTATTGGCTGAACGAGTCTTATGTTCCTTTACATCTTGTAAAAAATTTTGAGGAAAGAAGAATTGTCCGCAAGTCCAATGATAAGACGCTCGGAAAATTTCTTGAGATTGGTAGAGTAAAGAGGGTTCCTGAACAAAGGGGTTTTTCATATTTGTTTTCTAGAATGGAAAAATCTAATTTTCATCAGTGTGGGCATTGCAAAAAAGATGTTCCAATCAGTGAAGCTGTGAGTTGCCTTTATTGCAAAGGATTTTTCCACAAGAGGCATGCCAAGAAATCAGGTGGCACAAGAGCTACTGAATGCACATATTCATGTCGCAGATGCCAGGATGGGTTGCATGTAAAGACTAATACTAATAAAAGGAAAATTGGCTCAAAACTGCAAAAGATTCAATCACAGAATTGTAAGAGTGTCCCTTTGGTTTGTAAATCAGTGAAACTTAAAGGCAAGAAAAAGGCATCAAGTAAGGTGCAGCAGGTGATATCTCGAAACAGTAAGAACATCTCATCAATTGTACCTCTTCGTCGTTCTACTAGGAAGGCTAAATCATTGTATCTGCGCAATCAAATGATTGGAGGACGTAAAAATGGAATTCAAAGTAAAAGGAATGTAGGACGTAAAAAAGGAAAGCAAAGTAAATCCAAGAAAGTGACGTCTCAAAAGCCCAAGGAACCTACTGGACAGCATAAAAAATTTGCAGTCACTCGCGCATGTAAGAAAAGAACAGAACTCTGTAACAGTTACTGGCTTAATGGTCTTCGGTTTTCTAGAAAGCCAAATGATGAACGAGTAATGCTTTTTAAAGAGAAAAAGCATATTACCTCTGAAGATTTTTCTGGTTCCCGTGATTGTCCTAAATGCTGCCTTTGTTGTGGAGATGAAGCTACATCAAATTACATTGCTTGTGAAATTTGTGGAGATTGGTTTCATGGGGATGCTTTTGGTCTCTCTGTAGAGAATGCCAGACAACTTATTGGATTTAGGTGCCATGTGTGTCGTGATAGGATTGCTCCGATCTGTCCCCACGTGAAGATTAATGCGTTGTCTCACACTGAACAGGATGCTACAATTGAGTGTCAAGAGGAATGA 4437 0.4077 MVFVIRLLMMRGSLKRRDCIDLNLDVNDEVDVNFDVNLGGETLRQECVFDLNVGVCEEVKEAQGCADGNGYSEVDGVTRQLLEEESDVKHRSTGGDGVLGNLNCASDAIKLEEFHVSVGHIAEDASLCLIEEKEGHDGKENVAAVDPLRVSDDISVRDFDYVSFEAGAAVVNEYQNDPGSLCKQGSNQRKRRKVSDNLKATPDTALRRSSRRASARKRVSSAVSVEMIDDPLSSLETSVTEEKLLMLGNEKHEQCNVPIPKLQLPPSSQNLNLDDIPVLEFFSVYSCLRSFSTLLFLSPFELEDLVAALKSETPNALFDSIHVSILQTLRKHLDFLSNEGCQSASICLRNLNWDFLDLITWPIFMAEYLLIHSSQFKTSFDANLSMFRTDYYKQPVILKLEILQYLCDDMIEADTIRSELNRRSLVTETGMGFDQNIYFDKKKRAVMDVSGGSCLTEEIVDSTNDLNSDECCLCKMDGNLICCDGCPSAFHSRCVGLASDNLPEGDWYCPECAIGTHRDWMKSRRSLRGADLLGIDPHGCLYFGSCGYLLVSNSLDAGSLFKYYHRKDIHGVIEVLKTMDTFNRDLLMAIYKHWDIPANLNAGASNSTVFNQISCKNMQMTAEYYAKPTSSAPLTSSETCMDKNPVDNQKKLEKNSTIDCCTHDGQDFRKVGNQLDSVTTIESPCIASEGSADTAHMRSGIESVQMHRIYDSIGVSSTPYTNNKDTSQAPSGTDYINYYSFARVASLVAQELMCKLPEKNNKNIIMTEEEIISDQAKAIMKMSTNFCWPSIQNLNSAAQNEKCGWCFSCKVANDDRDCLYVSVVKPLSEVSKSTSVGLQPGKIQSGHLREIICHIFSLEVRLRGLLSGPWLNLHQTNLWHKDLLKTSDFLPVKRLLLLLESNLRHRALSADWLKHVDSVATMGSATHIVVGSARTSSRHGVGRKRSRHSNIESSSASNTTGGLGMYWWRGGRVSRKLFNWKVLPRSFITKAARQAGRTKIPGILYPENSDFAKRSRYVAWRASVEISTSVEQLALQVRELYSNIRWHDIENNHPLYVLDKESRKSVRLFKKAIVRRKCTDGQSVKYLLDFGKRRAIPDVVIKHGSLLEQPSSEKKKYWLNESYVPLHLVKNFEERRIVRKSNDKTLGKFLEIGRVKRVPEQRGFSYLFSRMEKSNFHQCGHCKKDVPISEAVSCLYCKGFFHKRHAKKSGGTRATECTYSCRRCQDGLHVKTNTNKRKIGSKLQKIQSQNCKSVPLVCKSVKLKGKKKASSKVQQVISRNSKNISSIVPLRRSTRKAKSLYLRNQMIGGRKNGIQSKRNVGRKKGKQSKSKKVTSQKPKEPTGQHKKFAVTRACKKRTELCNSYWLNGLRFSRKPNDERVMLFKEKKHITSEDFSGSRDCPKCCLCCGDEATSNYIACEICGDWFHGDAFGLSVENARQLIGFRCHVCRDRIAPICPHVKINALSHTEQDATIECQEE 1478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02100 1478 SMART testlast3 275 335 IPR018501 -
Car06g02100 1478 MobiDBLite consensus disorder prediction 175 198 - -
Car06g02100 1478 Pfam PHD-finger 471 513 IPR019787 -
Car06g02100 1478 MobiDBLite consensus disorder prediction 1316 1332 - -
Car06g02100 1478 CDD PHD1_AIRE 470 512 - -
Car06g02100 1478 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 462 529 IPR013083 -
Car06g02100 1478 MobiDBLite consensus disorder prediction 939 958 - -
Car06g02100 1478 PANTHER PHD FINGER FAMILY PROTEIN 13 1465 - -
Car06g02100 1478 MobiDBLite consensus disorder prediction 1305 1346 - -
Car06g02100 1478 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1396 1454 IPR013083 -
Car06g02100 1478 ProSitePatterns Zinc finger PHD-type signature. 471 512 IPR019786 -
Car06g02100 1478 SUPERFAMILY FYVE/PHD zinc finger 1398 1454 IPR011011 -
Car06g02100 1478 Pfam DDT domain 279 331 IPR018501 -
Car06g02100 1478 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 13 1465 - -
Car06g02100 1478 SUPERFAMILY FYVE/PHD zinc finger 455 513 IPR011011 -
Car06g02100 1478 ProSiteProfiles DDT domain profile. 275 335 IPR018501 -
Car06g02100 1478 ProSiteProfiles Zinc finger PHD-type profile. 468 515 IPR019787 -
Car06g02100 1478 SMART PHD_3 1403 1449 IPR001965 -
Car06g02100 1478 SMART PHD_3 470 513 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02100 Car-Chr6 21399707 21413718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02100 15 1460 PHD Transcription Factor Family AT5G12400 42.579 0.0 1051
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Car06g02100 DDT 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02100 - - mtr:MTR_4g076180 2227.59