Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02055 ATGGGAACGCAACCGCCTCAATCGTGTGTAGATGAAGAGGATGAGGAACTGTTTGGTTGTGGAACTACAATTTCGGGACAATCAGGCTCCACAAGCAGGAGTGCCGGGTTGCCGTCTAGCCGAAGCGAGCAGACGACGGGGACAACCGCAGGTGATAATGCTGCTCGCAAATTAAATAATCTCGACATACATGATGATGATGCTGGATCACAGGGAGTAGTTGCTAGCAGGAAGAAAAAGAGGGGCCAACGGGCTGTTGGGGGTGATAAGAGTGGAAGAGGCCTCCGGCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGTAAAGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAATTTTCTGATCCAAGCAATAGTGTTTTGTCCCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTCTATGATGCTCTGAATGTTCTCATGGCTATGGATATTATTTCCAAGGATAAAAAAGAAATACAATGGAAGGGTCTTCCTCGTACCAGTCTGAATGATATTGAAGAACTAAAGACAGAGCATCTTGGGCTCAGGAGTAGAATTGAAAGGAAAGCAGCCTATCTGCAGGAGCTTGAGGAGCATTTTGTAGGTCTTCAGAACCTTATTCAAAGAAATGAGCAATTATATAGCTCAGAAAATCCTCCCAGTGGAGGTGTATCGTTACCTTTTATTCTGGTACAGACACGGCCTCATGCAACAGTTGAAGTTGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTCAATAGTACTCCTTTTGAGCTGCATGATGACAATTATGTTCTCAAGGCAATGAAATTCTGTGAAAGACCACAAAGTGACAATGTTACACACAATGTTGCGATTGGAGGGGAAGGTTCTAGTATGTCAGGCATGTATCAGTCACAGGTTCCTCCTTTAGTTTCAAACATCTCAGTTAGGCCTCCCATATCACCTCCACTCCCTGGAATATTAAAGGCAAGACATAAGCAAGAGCATTGA 1029 0.4344 MGTQPPQSCVDEEDEELFGCGTTISGQSGSTSRSAGLPSSRSEQTTGTTAGDNAARKLNNLDIHDDDAGSQGVVASRKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPSNSVLSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTEHLGLRSRIERKAAYLQELEEHFVGLQNLIQRNEQLYSSENPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDNVTHNVAIGGEGSSMSGMYQSQVPPLVSNISVRPPISPPLPGILKARHKQEH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02055 342 MobiDBLite consensus disorder prediction 21 55 - -
Car06g02055 342 CDD DP_DD 178 281 IPR014889 -
Car06g02055 342 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Car06g02055 342 PIRSF Txn_factor_DP 6 342 IPR015648 GO:0005667|GO:0051726
Car06g02055 342 Coils Coil 203 223 - -
Car06g02055 342 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Car06g02055 342 Pfam Transcription factor DP 181 313 IPR014889 -
Car06g02055 342 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Car06g02055 342 SMART DP_2 180 340 IPR014889 -
Car06g02055 342 SUPERFAMILY E2F-DP heterodimerization region 179 294 IPR037241 -
Car06g02055 342 PANTHER TRANSCRIPTION FACTOR DP 22 342 IPR015648 GO:0005667|GO:0051726
Car06g02055 342 PANTHER TRANSCRIPTION FACTOR DP 22 342 - -
Car06g02055 342 Gene3D Transcription factor DP 179 299 IPR038168 -
Car06g02055 342 MobiDBLite consensus disorder prediction 1 93 - -
Car06g02055 342 Gene3D - 85 178 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02055 Car-Chr6 20470017 20474638 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02055 63 291 E2F-DP Transcription Factor Family AT5G02470 51.293 1.98e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Car06g02055 DP 2.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02055 K04683 - qsu:112000390 546.969