Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02046 ATGACAGCTGGTAGCATGAATTATGTATTACCACCATTCTTGAGCAAGACCTACGACATGGTAGATGACTCATCTACCAACTCCATCGTTTCATGGGGAAATAACAACAACACCTTTATCGTTTTGAATTCCACCGACTTCTCCAAACACATCTTGCCCAAATATTTCAAACACAACAACTTCTCCAGCTTCGTCAGACAGCTCAACACCTACGGTTTTAGAAAGGTTGACCCAGACCGCTGGGAATTTGCACACGAAGGATTTTTAAGGGGTCAAAAACAATTGTTGAAGACTATCAGTAGGAGGAAATCTGCTCATGCAAATGGTAATAGTCAAGAGTCATCTAAGGTGCAAAACTCGTCTGTTGGGGCATGTGTTGAAGTGGGGAAGTTTGGGCTTGATGAGGAAGTTGAAAGACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTTGTTAAGTTAAGACAACAACAACAAACGACTGATAACCAATTGCAAAATGTTGGCCAACGTGTGCAAGTGATGGAGCAGCGTCAGCAACAGATGATGTCTTTCCTGGCAAAGGCTATGCATAGTCCGGGCTTCATGGCTCAATTTGCACAACAGCAGAATGAAAGTAATAGACACGTCGCCGGAGGTAAAAAGAGGCGGCTCCAAAGGCAGGAAGAAGATAGTTTAGCCACCAAAAGTCTCCACAATCCTCTTGATGGATGTGTTGTCAAGTACCAGTCTCCAATTAATGAGGCTGCAAAAGCATTGTTTAGCCAGATGTTGCAAATGAACAATTCTACAAGGACGGAGTCATCCGTTAAGAACTTTGATACATTCCTTATTGATGATGTTCCTTCAGCCATTCCTTTAGATAGCAGTAGTTCGTCCACCCAGGTTTCTGGTGTAACACTTTCTGAGGTTCCACCTATTTCTGGGCAGTCATGTATGGCAGTAGAATCTCAATTTCCTGTAAGTTGTATGACGAATAGCATGTCTGAGGTACAATCTTCACCTGCTGTGTTGACTAACTGTGTCAAAGCAGCTGAGTTTCCTGAATTAACAGCACATAACTGCCAAGACAATGTTTTGGATTTTAGTAAAGTTCAAGGGTTGGTTACAGAAAGCAGCTTCATGAATCCTGATCAAAATTTTGTGGGGTCTGTCGCCCAGAATGAGGGGGAGTTGGATGTGATGTCAGCTGTTTTAGATGGGACACAGTCTTTGGAAGCTGATGCTTTTTCACCTGATGTAAATGGAATTTCCAAACTTCCAGGAATCAATGATGAATTCTGGGAACTGTTTTTTATGCCAAGCCCACTTACTGGAGACACTGATGAAATTGAAGGTAGCTCTCTAGGATATGATTTGACTAAGGACCAGGAATTGTCATTAGAAAAGGAGATTCAACAAGAAAAGATGGAGAAGAAACAACATATGGATCATCTTACTCAACAGATGGAACTTCTTGCATCAGACTCATCATTGTGTATATAA 1485 0.4168 MTAGSMNYVLPPFLSKTYDMVDDSSTNSIVSWGNNNNTFIVLNSTDFSKHILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFAHEGFLRGQKQLLKTISRRKSAHANGNSQESSKVQNSSVGACVEVGKFGLDEEVERLKRDKNVLMQELVKLRQQQQTTDNQLQNVGQRVQVMEQRQQQMMSFLAKAMHSPGFMAQFAQQQNESNRHVAGGKKRRLQRQEEDSLATKSLHNPLDGCVVKYQSPINEAAKALFSQMLQMNNSTRTESSVKNFDTFLIDDVPSAIPLDSSSSSTQVSGVTLSEVPPISGQSCMAVESQFPVSCMTNSMSEVQSSPAVLTNCVKAAEFPELTAHNCQDNVLDFSKVQGLVTESSFMNPDQNFVGSVAQNEGELDVMSAVLDGTQSLEADAFSPDVNGISKLPGINDEFWELFFMPSPLTGDTDEIEGSSLGYDLTKDQELSLEKEIQQEKMEKKQHMDHLTQQMELLASDSSLCI 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02046 494 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g02046 494 SMART hsfneu3 9 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g02046 494 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g02046 494 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g02046 494 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g02046 494 MobiDBLite consensus disorder prediction 209 226 - -
Car06g02046 494 Coils Coil 462 482 - -
Car06g02046 494 Coils Coil 130 157 - -
Car06g02046 494 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g02046 494 Gene3D - 6 103 IPR036388 -
Car06g02046 494 MobiDBLite consensus disorder prediction 204 226 - -
Car06g02046 494 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 465 IPR027725 -
Car06g02046 494 SUPERFAMILY "Winged helix" DNA-binding domain 10 102 IPR036390 -
Car06g02046 494 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1E-LIKE 6 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02046 Car-Chr6 20415035 20418430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02046 10 490 HSF AT5G16820 51.016 2.16e-143 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car06g02046 HSF_DNA-bind 5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02046 K09419 - gmx:100793665 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02046 06 20415035 20418430 Car06g02046 06 20415035 20418430 ECH