Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02037 ATGATGGGGAGAACACCATGCTGTGATGAACGTGGTTTGAAGAAAGGACCTTGGACACCAGAAGAAGATAGAATATTGGTGGATTACATTGAGAAACATGGCCATGGAAGTTGGAGAGCACTTCCAAAGCTAGCAGGATTGAACAGGTGTGGTAAGAGTTGCAGACTTAGGTGGACTAACTATTTAAGACCTGATATCAAAAGAGGAAAATTCACTGAGGAAGAAGAACAATCCATCATCAATTTACATGCTGTTCTTGGAAATAAGTGGGCTACTATAGCAGGTCATCTACCAGGGAGGACTGATAATGAAATAAAGAATTTTTGGAACACTCATTTAAAGAAAAAGCTTCTACAAATGGGATTAGATCCAGTGACTCATCGTCCAAGAATTGATCACCTTAATCTAATGTCTAATCTTCAACAAATTCTAGCTGCAAACATTCTCAATACTACTTTTCCAAACACTTTGGATAATGCTCTAAGGCTTCAATCAGATGCAACACAACTAGCCAAACTTCAATTGCTTCAAAACATACTTCAAATTCAAATCCTTGGTGCCAATACTCCTAATACTTCAAACTTAGAACTACTCAATTCATTTGGAAATTCATCTTCACCACTGCAAGAAAGTTTTCTAAATGAACTTTTAGGATTGAATTATCAAACTAAGTTCCAAAATGTTTATGATGGATATTTTCCTTCTCAACAAAATCAGACAAATTTTCAAAGCTTTGAAGCACCACCTCAGATGCAGCCACCTCAAAAAGTTGATGAATTATCATTTGATCATGCTACAAATTCATCTTCAACAACAACACCATTAAATTCACTTCCAAATCTAGTTTCAGTTTCACCAGAATGTTCTGCTGTTAAACAGATCAAGGAAAATAAGAGAAACCAAAATGAGTGTTCCATTTCCAATTCAACTACCTTTGAAATGTTGGGAGATTTCATGTATGAAGAAGTAAGCGATGTTTATTGGAAAGATCTCTTAGACCAAGAGTCTAACCAGTAA 1017 0.3579 MMGRTPCCDERGLKKGPWTPEEDRILVDYIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEEQSIINLHAVLGNKWATIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRIDHLNLMSNLQQILAANILNTTFPNTLDNALRLQSDATQLAKLQLLQNILQIQILGANTPNTSNLELLNSFGNSSSPLQESFLNELLGLNYQTKFQNVYDGYFPSQQNQTNFQSFEAPPQMQPPQKVDELSFDHATNSSSTTTPLNSLPNLVSVSPECSAVKQIKENKRNQNECSISNSTTFEMLGDFMYEEVSDVYWKDLLDQESNQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02037 338 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Car06g02037 338 PANTHER MYB TRANSCRIPTION FACTOR 4 335 - -
Car06g02037 338 Gene3D - 12 68 - -
Car06g02037 338 SMART sant 14 64 IPR001005 -
Car06g02037 338 SMART sant 67 115 IPR001005 -
Car06g02037 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Car06g02037 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Car06g02037 338 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Car06g02037 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 335 - -
Car06g02037 338 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Car06g02037 338 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Car06g02037 338 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Car06g02037 338 CDD SANT 70 113 IPR001005 -
Car06g02037 338 CDD SANT 17 62 IPR001005 -
Car06g02037 338 Gene3D - 70 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02037 Car-Chr6 20344409 20346102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02037 2 333 MYB Transcription Factor Family AT5G16770 49.716 5.87e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car06g02037 Myb_DNA-binding 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02037 K09422 - gmx:547488 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g00112 08 862306 863871 Car06g02037 06 20344409 20346102 ECH
Car06g02037 06 20344409 20346102 Car06g02037 06 20344409 20346102 ECH