Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02016 ATGTCGCTGCAGACTCTGAAGGAAACACTCAGACATTGCACAACCCAACAATCACAACAACCATCATCTTCTTCTTCATCCCAAACACACACCAATTCTATTCTCCGCGATTTCGGTTCCCAATTCCCAATCACCCGAAAACCCCCCAAATCCTCTCTCGCCGATCAGCTTCGCCGCCTTGAGGACCCGGAGGACCCACCCTTTCAGCCCCACAATTTCCTCCACACACAAAACCACTCCAAAACCCAACAGCAAAACTTACAACTagacgaagaagaagaggaccatgaagacgaagaagaagaagaGCCAGATATAAAGAGAGTGAAATTCAGTACATCCAAATCGTCTCAGTTTCAATTTGAACATACTGGACCTTTTGAGCCTTTGCTATTGTCTTCTCATGGTGAACTTCCTTTAGTTCAGGTTCCTGCATCTATAAACTGTAGGCTGCTTGAGCATCAAAGAGTGGGAGTGAAATTTCTGTATGATTTGTACAAGAATAATCATGGAGGCATCCTTGGAGATGACATGGGTCTTGGAAAGACTATTCAAACAATAGCATTTCTTGCTGCCATATTTGCTAAAGAAGGAGAGTCTATTCTTAGTGAGAAGCGAATAGAGAAAAGAGACCCTGTATTAATAATTTGCCCAACATCCATTATTCACAACTGGGAGAGTGAATTCTCTAAGTGGTCCAACTTTAGTGTTTCAATTTATCACGGTGCAAACCGTGATTTGATATATGACAAATTGGAAGCAAATGGAGTGGAGGTACTTATTACCAGTTTCGACACTTACAGGATTCATGGCAGCAGTTCCTTGTCAGATATCCACTGGAACGTTGTGATTATTGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCTTGTTTAGAAATTAAAACCCTGAGACGATATGGTCTTACAGGGACAGTAATGCAAAATAAGATCTTAGAATTGTTCAATATCTTTGATTTGGTTGCACCGGGATCCCTTGGAACACGGGAACACTTCCGTGAGTTTTATGATGAACCCCTCAAACATGGTCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTAACAGTTCTTAATAAATATATGTTGAGAAGGACAAAGGAAGAAACCATAGGGCATCTTATGATGGGAAAGGAAGATAACATTGTATTTTGTGCAATGAGTGATTTGCAAAAACGTGTTTATAGGAGGATGATCCAGCTTCCTGACATTCAGTGCCTTATAAATAAGGACCTGCCTTGTAGTTGTGGTAGCCCTCTCACTCAAGTTGAATGTTGCAAAAGGATGGTACCAGATGGAGTTATTTGGCCTTACCTTCACAGAGATAACCCCGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCATGCCTTGTCAAGCTACAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGATCCTGACAAACAAGTTAAAGATGCAAAGTTTGCTGCTGCTGTCTATGGTCCAGACATTGACTTAGTGGGTGGGAGCATGCAAAATGAGAGTTTCCTGGGTCTAAGTGATGCAGAACATTGTGGCAAAATGCGAGCACTTGAAAAACTTTTGTTTTCATGGTTTACACATGGTGACAAAGTTCTCTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTATCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGTTCCACTCCAACTAATTTACGCCAGTCTCTGGTTGATGATTTCAACTCTAGTGCAAGCAAACAAGTGTTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCGAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGATATGGACAGAAACGGCATGTTGTGGTATTCCGTCTTCTCGCAGCGGGTTCACTTGAAGAACTAGTTTATTCTCGTCAGGTGTACAAGCAGCAGCTCGCAAACATTGCTGTCTCTGGAAAGATGGAAAAACGGTATTTTGAAGGTGTCCAGGACTGCAAGGAATTTAAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGATAAAATATTTACAAGTGAGATCATTGAATTGCATGAGACGAGTAAAAGAGATGGGCTTAAAACAGAACAGCAGAAAAAAATAAATCTGCCAGGAGAAACATGTTTATTAGCATCAGAGTCTGAAACCAGGTTATGTGCTGAATCTGCGAGGGCTCCAACAAGTAAACCGGGTCTTGAATTTGAAGACCTAGGTATGTGTCATGCAATTTTATTACCTTCTAAGAAGCTGGTGAAATGA 2403 0.4066 MSLQTLKETLRHCTTQQSQQPSSSSSSQTHTNSILRDFGSQFPITRKPPKSSLADQLRRLEDPEDPPFQPHNFLHTQNHSKTQQQNLQLDEEEEDHEDEEEEEPDIKRVKFSTSKSSQFQFEHTGPFEPLLLSSHGELPLVQVPASINCRLLEHQRVGVKFLYDLYKNNHGGILGDDMGLGKTIQTIAFLAAIFAKEGESILSEKRIEKRDPVLIICPTSIIHNWESEFSKWSNFSVSIYHGANRDLIYDKLEANGVEVLITSFDTYRIHGSSSLSDIHWNVVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTVMQNKILELFNIFDLVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVTVLNKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRVYRRMIQLPDIQCLINKDLPCSCGSPLTQVECCKRMVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQVKDAKFAAAVYGPDIDLVGGSMQNESFLGLSDAEHCGKMRALEKLLFSWFTHGDKVLLFSYSVRMLDILEKFIIRKGYCFSRLDGSTPTNLRQSLVDDFNSSASKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRYGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLANIAVSGKMEKRYFEGVQDCKEFKGELFGICNLFRDLSDKIFTSEIIELHETSKRDGLKTEQQKKINLPGETCLLASESETRLCAESARAPTSKPGLEFEDLGMCHAILLPSKKLVK 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02016 800 PANTHER SNF2/RAD54 FAMILY MEMBER 21 740 - -
Car06g02016 800 MobiDBLite consensus disorder prediction 52 68 - -
Car06g02016 800 Gene3D - 131 384 IPR038718 -
Car06g02016 800 MobiDBLite consensus disorder prediction 1 107 - -
Car06g02016 800 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 544 697 IPR001650 -
Car06g02016 800 CDD SF2_C_SNF 538 664 - -
Car06g02016 800 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 163 335 IPR014001 -
Car06g02016 800 SMART helicmild6 570 653 IPR001650 -
Car06g02016 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 708 IPR027417 -
Car06g02016 800 MobiDBLite consensus disorder prediction 71 85 - -
Car06g02016 800 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 21 740 - -
Car06g02016 800 Coils Coil 79 102 - -
Car06g02016 800 Pfam SNF2-related domain 167 424 IPR000330 GO:0005524|GO:0140658
Car06g02016 800 Gene3D - 397 728 IPR027417 -
Car06g02016 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 385 IPR027417 -
Car06g02016 800 MobiDBLite consensus disorder prediction 1 39 - -
Car06g02016 800 SMART ultradead3 147 343 IPR014001 -
Car06g02016 800 Pfam Helicase conserved C-terminal domain 541 653 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02016 Car-Chr6 20136432 20141479 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02016 595 696 RAD5 or RAD16-like Gene Family AT3G16600 37.255 1.92e-11 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car06g02016 SNF2_N 5.8e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02016 K20098 - gmx:100781003 1258.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02016 06 20136432 20141479 Car06g02016 06 20136432 20141479 ECH