Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02013 ATGGCTTCACTTTCATCTCCTCATTCCTTTACCAGTTGTATGCTATTCCTCTTTTTTCTATATTTATCTTGTTTCTTCAACAACCTTAATGCAAAACACGACATAGCCAacaatcacaagcaccaacacagacacaaacacacacaaaaTCCACCATCAAATCCAAGGCTTTACCGCGCTTTTCTTGCGCTACAAGCATGGAAGCATGTAATCTACTCAGACCCAAAAAACACAACTTCCAATTGGATAGGCCCTTCAGTTTGCAACTACACAGGTATATACTGTGCTCCATCACTTGATGATCCTAAACAAACAGTTGTTGCTGGCATTGACCTTAACCATGCCGATATAGCCGGGTTCTTACCCGAAGAATTAGGCCTTTTATGTGACCTTTCACTTCTCCACCTCAACAGCAACCGTTTCTGCGGCATCCTTCCAACAACATTCACAAACCTTACACTTCTCTATGAACTTGATCTTAGCAACAATAGATTTGTTGGCCCTTTTCCATCAGTTGTCCTTTCACTTCCTTCACTTACCTATCTCGACCTTCGCTACAACGAATTCGAAGGACCGTTACCTCCTCAACTTTTCAACAAACCTTTTGATGCTTTTTTTCTCAACAGCAACCGTTTCACAAGTTCCATTCCAAGAAATTTAGGACAAAGCAAAGCTTCTGTCATGGTTTTTGCAAATAACAAATTTGGTGGCTGTTTACCAGAAAGCATAGTAAACTTTGCTGATACTTTGGAAGAGCTTCTCTTAATCAACACAAGCTTATCAGGTTGTCTTCCACAACAAGTTGGATTTTTATACAAATTGAGAGTGTTGGATTTTAGCTTCAACAATATTGTTGGTCCTATACCTTATAGTCTTGCAGGGTTGTCACATTTGGAACAGTTGAATTTAGGACATAATATGATGAGTGGAATTGTTCCTATGGGAGTTTGTGAGTTACCAAATTTGGAAAATTTCACATTTTCTTATAACTTTTTTTGTGAGGAAGAAGGTATTTGTAAGAATTTGACATCAAAGAGGATAGTGTTCGATGATCGCGACAATTGTTTGCCGGAGAAGCCACGGCAGAGGAGCAAAAAGGAATGTAGTGATAATCTTGAACGCCCTGTTGATTGCTTTGAGCTTTGTTGTATTGAAGATGGTTTTGGGAAAAATGTCACTGCTGGTTCTGTGGCTATTCCACCTGCTGCAATGCCTGTTTCTGCACCTATTGTTGCACCAAGTTTCCCTTGA 1251 0.3845 MASLSSPHSFTSCMLFLFFLYLSCFFNNLNAKHDIANNHKHQHRHKHTQNPPSNPRLYRAFLALQAWKHVIYSDPKNTTSNWIGPSVCNYTGIYCAPSLDDPKQTVVAGIDLNHADIAGFLPEELGLLCDLSLLHLNSNRFCGILPTTFTNLTLLYELDLSNNRFVGPFPSVVLSLPSLTYLDLRYNEFEGPLPPQLFNKPFDAFFLNSNRFTSSIPRNLGQSKASVMVFANNKFGGCLPESIVNFADTLEELLLINTSLSGCLPQQVGFLYKLRVLDFSFNNIVGPIPYSLAGLSHLEQLNLGHNMMSGIVPMGVCELPNLENFTFSYNFFCEEEGICKNLTSKRIVFDDRDNCLPEKPRQRSKKECSDNLERPVDCFELCCIEDGFGKNVTAGSVAIPPAAMPVSAPIVAPSFP 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02013 416 Pfam Leucine rich repeat 273 330 IPR001611 GO:0005515
Car06g02013 416 Pfam Leucine rich repeat 131 188 IPR001611 GO:0005515
Car06g02013 416 SUPERFAMILY L domain-like 61 344 - -
Car06g02013 416 Gene3D Ribonuclease Inhibitor 230 365 IPR032675 -
Car06g02013 416 Gene3D Ribonuclease Inhibitor 61 229 IPR032675 -
Car06g02013 416 PANTHER EXTENSIN-LIKE PROTEIN 1 414 - -
Car06g02013 416 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02013 Car-Chr6 20111492 20112886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02013 54 383 Leucine-rich Repeat extension Gene Families AT3G24480 57.100 1.91e-134 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02013 - - gmx:100802803 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02013 06 20111492 20112886 Car06g02013 06 20111492 20112886 ECH