Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02007 ATGAGCGGAATACTTTGTGAAGAGCAACAAAAACTTCTCCTTTCCTTAAAAAAATCTCTTACTCTCAGGGACAAAATCGACATTGACAATACTCCACCAAGGAAGCTACTCGCTCGCCGACAACCCGCCGCCGACATGCTTCCCGACGAAGACCCATATTCCTCCGATCAATTCCGTATGTACGAATTCAAGGTCCGGAGATGCACCCGAAGCCGAAGTCACGACTGGACCGACTGTCCCTTCGCCCATCCCGGCGAGAAGGCCCGCCGTCGCGACCCCCTGAAGTATCAGTACTCCGGCGAGGTGTGTCCTGATTACCGGCGCGGAAACTGCGAACGCGGCGACGCGTGCGAGTTTTCCCACGGCGTTTTTGAATGCTGGTTGCATCCTTCAAGGTACTCCAAGAATATGCATGTGCTTAATGAGCTTATGCGTTCAATTGAATTGGAGAGTGCTCTGAATTCCCCTGTTTCTGCTACCAAATTGCCTTGGCTTGATGTTAATGTTTCTGATCAATATTCTCCTTTTGGCTGTGAAGATCATAGCCAGAACCATGTAATTGATGTTTTGCCAACCATGAATTGTGGAAAATATTATTCAAGTGATGATGCAGAGTTTGTGAGGGAACAGAGGAAGGTGGTTGGTGATGATGATGTCATAGCAGTCCCTGATTTTGGGTGGGTCAATGACTTGCTCATGTAG 702 0.4843 MSGILCEEQQKLLLSLKKSLTLRDKIDIDNTPPRKLLARRQPAADMLPDEDPYSSDQFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPLKYQYSGEVCPDYRRGNCERGDACEFSHGVFECWLHPSRYSKNMHVLNELMRSIELESALNSPVSATKLPWLDVNVSDQYSPFGCEDHSQNHVIDVLPTMNCGKYYSSDDAEFVREQRKVVGDDDVIAVPDFGWVNDLLM 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02007 233 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 122 IPR000571 GO:0046872
Car06g02007 233 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 43 133 - -
Car06g02007 233 ProSiteProfiles Zinc finger C3H1-type profile. 97 124 IPR000571 GO:0046872
Car06g02007 233 SMART c3hfinal6 97 123 IPR000571 GO:0046872
Car06g02007 233 Gene3D - 61 125 - -
Car06g02007 233 SUPERFAMILY CCCH zinc finger 98 122 IPR036855 GO:0046872
Car06g02007 233 PANTHER UNKEMPT FAMILY MEMBER 43 133 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02007 Car-Chr6 20050270 20051265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02007 53 133 C2H2 Transcription Factor Family AT5G12850 64.198 1.59e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car06g02007 zf-CCCH 4.3e-06 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02007 06 20050270 20051265 Car06g02007 06 20050270 20051265 ECH