Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02004 ATGGTTTCCAAACCCAAGAACGCCACTCTCAAAATCAACAAGCCTTGCAATAATGCAGCTGAGGTTCACTTCAGAGGCGTTAGGAAGAGACCGTGGGGTCGTTACGCCGCCGAGATTAGAGATCCCGGTAAGAAAAGCCGCGTTTGGCTCGGTACTTTCGACACCGCCGAAGAAGCCGCTAGAGCTTACGACGCCGCCGCTCGTCAGTTTCGTGGTCCCAAAGCCAAGACAAACTTCCCTCCTCCCTCCGACATCAAAGAGGATAATAACGTTAATAATCAGAGCCCAAGCCAGAGTAGCACCGTCGAGTCGTCCACACCGGAGCGTGAAATCACGCGCCCTCGTGAAGTTTCAGGCGGCGTAATGGATCGTTTCCCGTTTCTTTCGATCCAGCAACAGTATATGCCGTTTTCCGGTACCGGTGGTGTTGCTGTTGATGGAATGGTGACTGCTGTGCATCCGGTTTTCTTTCTCGACCCGGCGGCTCGAgctgagtttctgaatcagagattttctccccggtttGAACCGAGTCCGGTTGAGTTTAACATCGGGTTTTGTGGTGGGGTCCAGAGCGATTCAGATTCATCCTCTGTCGTTGATTGTCAGCCCAAAAGAGCTCTCAATCTTGATCTTAACTTAGCACCACCAATGGATGTTTAA 663 0.4902 MVSKPKNATLKINKPCNNAAEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGPKAKTNFPPPSDIKEDNNVNNQSPSQSSTVESSTPEREITRPREVSGGVMDRFPFLSIQQQYMPFSGTGGVAVDGMVTAVHPVFFLDPAARAEFLNQRFSPRFEPSPVEFNIGFCGGVQSDSDSSSVVDCQPKRALNLDLNLAPPMDV 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02004 220 MobiDBLite consensus disorder prediction 83 107 - -
Car06g02004 220 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Car06g02004 220 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677
Car06g02004 220 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Car06g02004 220 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Car06g02004 220 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Car06g02004 220 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Car06g02004 220 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Car06g02004 220 MobiDBLite consensus disorder prediction 69 116 - -
Car06g02004 220 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Car06g02004 220 PANTHER ERF FAMILY PROTEIN 5 209 - -
Car06g02004 220 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02004 Car-Chr6 20018220 20019941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02004 21 218 AP2-EREBP Transcription Factor Family AT5G44210 49.505 2.00e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Car06g02004 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02004 K09286 - gmx:100801924 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02004 06 20018220 20019941 Car06g02004 06 20018220 20019941 ECH
Car06g02004 06 20018220 20019941 Car01g00341 01 2671244 2672461 ECH