Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01998 ATGCTTGCGGCGTCACCATTGAGGAACACCAAAGATGAAAAGCAAGAAGAGATGGAGAGTTTTTCCGACGGAAATTTATTGGAAAGCATCAACTATGACGATTTCTTTGTTGGCATCGATGTCGACGGAGACGTGTTGCCAGATTTGGAGATGGATTCGGAGTTGTTCGCCGTTAGTTGCGGGGAGGAATCGGAGATGAAGGAAGAGATAGTGATAGTGAGTGGAAGAGATGAATCAGTTGTTCATAATGGAAAAGGAAGAAAATCATCCAATCATCAATCTAAGAACCATCAAGGGAAGAGAAAAGTAAAGGTGGATTGGACCCCAGAATTGCATAGGAGATTTGTACAAGCAGTGGAACAGCTAGGGGTAGATAAGGCCGTGCCTTCAAGAATTTTGGAGATTATGGGAATTCATTGTCTCACTCGTCATAACATTGCTAGCCACCTCCAGAAATATAGGTCCCACAGAAAACATTTACTAGCGCGTGAAGCAGAAGCTGCCAGCTGGAATCAAAGGAGACAATTGTATGGCGTAGGAGGAATGAGAGAAATGATGAGTCCATGGGCAGCACCACCCACCATGGGTTTtccaccaccaccaccaccacctcctcctcctcctcctccCATCAACCCCCAAATGCACCATTTTAGACCCTTACATGTTTGGGGACATCCTTCAATGGATCATTCCTTTATGCACATGTGGCCTAAACACCTACCACATTCGACACCTCCGCCTCCACACTCATGGCCACCTGTGGCAGCTCCTCCTCCACCACCTCAAGACCCTTCATTCTGGCATTCTCACTACCAACGGAGTCCAAACGCAATAGTCCCAGGAACACATTGTTTCCCACAACCTCTGACAACAGCGAGATCGTTTGATGCTGTCCCCGGCATTCCACGGCATGGTATGTACAAAGCAGATCACGGCATTTCCGCCAGGCCTGCTCCTGGACCCCTCTTCGACATCCACCCGTCAAAGGAGAGCATAGACGAAGCTATTGGAGATGTTTTATCAAAACCATGGTTGCCGCTACCACTTGGACTTAAAGCTCCAGTGCTTGATAGCGTAATTGGTGAACTACATAGACAAGGAATTTCAAACATTCCACCCTCTTCATGTGCTTGA 1137 0.4529 MLAASPLRNTKDEKQEEMESFSDGNLLESINYDDFFVGIDVDGDVLPDLEMDSELFAVSCGEESEMKEEIVIVSGRDESVVHNGKGRKSSNHQSKNHQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIHCLTRHNIASHLQKYRSHRKHLLAREAEAASWNQRRQLYGVGGMREMMSPWAAPPTMGFPPPPPPPPPPPPPINPQMHHFRPLHVWGHPSMDHSFMHMWPKHLPHSTPPPPHSWPPVAAPPPPPQDPSFWHSHYQRSPNAIVPGTHCFPQPLTTARSFDAVPGIPRHGMYKADHGISARPAPGPLFDIHPSKESIDEAIGDVLSKPWLPLPLGLKAPVLDSVIGELHRQGISNIPPSSCA 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01998 378 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 102 156 IPR006447 GO:0003677
Car06g01998 378 PANTHER TRANSCRIPTION ACTIVATOR GLK1 72 376 IPR044825 GO:0003700|GO:0045893
Car06g01998 378 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 67 IPR044825 GO:0003700|GO:0045893
Car06g01998 378 Gene3D - 99 160 - -
Car06g01998 378 MobiDBLite consensus disorder prediction 243 272 - -
Car06g01998 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 158 IPR017930 -
Car06g01998 378 SUPERFAMILY Homeodomain-like 100 159 IPR009057 -
Car06g01998 378 MobiDBLite consensus disorder prediction 243 266 - -
Car06g01998 378 MobiDBLite consensus disorder prediction 1 22 - -
Car06g01998 378 Pfam Myb-like DNA-binding domain 105 154 IPR001005 -
Car06g01998 378 MobiDBLite consensus disorder prediction 80 103 - -
Car06g01998 378 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 67 - -
Car06g01998 378 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 72 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01998 Car-Chr6 19957621 19964589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01998 21 250 G2-like Transcription Factor Family AT5G44190 49.425 4.60e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Car06g01998 Myb_DNA-binding 5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01998 - - cam:101498306 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01998 06 19957621 19964589 Car06g01998 06 19957621 19964589 ECH
Car06g01998 06 19957621 19964589 Car01g02421 01 49961432 49966304 PCT