Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01996 ATGGGTGTTGATTACTACAAAATCTTGCAGGTTGATAAGAATGTCAAAGACGAAGACTTGAAGAAGGCTTATAGAAAACTTGCTATGAAATGGCACCCTGATAAAAACCCAACCAACAAAAAAGATGCAGAAACTAAGTTCAAGCAAATTTCTGAAGCTTATGAGGTGTTAAGTGATCCTGAAAAGAGAGCTATCTATGATCAATATGGGGAAGAGGGTTTAAAGGGGCAAGTTCCTCCTCCTGAAGCTGGTGCTGGTGGTGGAACTAGTTTCTATTCCACAGGAGATATACCTGGATCGTTTCGGTTTAATCCGAGGAATGCAGATGAGATTTTTGCAGAGTTTTTTGGGTTCTCAAGCCCATTtggtggaagaggtggtggtggtggtggCATGAGATCTAGGTTCTCTGGAGGAATGTTTGGTGATGATATGTTTAGATCTTTTGGTGAAGGTGGAGGAATACATATGAATCAAGCTGCACCTCGTAAAACACCTCCTATTGAGAAAAAGTTGGCTTGTACTCTGGAGGAGATATATAGAGGAACTACAAAGAAGATGAAGATCTCTAGAGAAATAGCAGATGCCAGTGGCCAAACAATGCCAGTGGAAGAGATATTGACCATAAATGTGAAGCCTGGTTGGAAAAAGGGAACAAAGATCACCTTCCCAGAGAAAGGTAACGAACAGCTGAATGTAACTGCCGCAGATCTTGTTTTTGTGATCGATGAAAGGCCACACAGTGTCTTCAGTCGTGAAGGGAATGATTTGATTGTGACTCAAAAGATATCTCTTGTGGAGGCCTTAACTGGTTATACAGTACACCTCACTACCCTAGATGGTAGAAACTTAAGCATACCAATCAACAATGTTATCCATCCTAACTATGAGGAGGTTGTTCCAAAAGAAGGAATGCCTCTCCCCAAGGATCCATCAAAGAAGGGTAACTTGAGGATAAAATTCAACATTAAGTTCCCAACTCGGCTCACTGATGAACAAAAAATAGGAATTAGGAAACTCTTGACTGCCTCAGCTTGA 1038 0.3979 MGVDYYKILQVDKNVKDEDLKKAYRKLAMKWHPDKNPTNKKDAETKFKQISEAYEVLSDPEKRAIYDQYGEEGLKGQVPPPEAGAGGGTSFYSTGDIPGSFRFNPRNADEIFAEFFGFSSPFGGRGGGGGGMRSRFSGGMFGDDMFRSFGEGGGIHMNQAAPRKTPPIEKKLACTLEEIYRGTTKKMKISREIADASGQTMPVEEILTINVKPGWKKGTKITFPEKGNEQLNVTAADLVFVIDERPHSVFSREGNDLIVTQKISLVEALTGYTVHLTTLDGRNLSIPINNVIHPNYEEVVPKEGMPLPKDPSKKGNLRIKFNIKFPTRLTDEQKIGIRKLLTASA 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01996 345 Pfam DnaJ domain 4 67 IPR001623 -
Car06g01996 345 CDD DnaJ_C 166 329 - -
Car06g01996 345 SUPERFAMILY Chaperone J-domain 3 130 IPR036869 -
Car06g01996 345 Pfam DnaJ C terminal domain 168 326 IPR002939 -
Car06g01996 345 CDD DnaJ 4 59 IPR001623 -
Car06g01996 345 SUPERFAMILY HSP40/DnaJ peptide-binding domain 249 334 IPR008971 GO:0006457|GO:0051082
Car06g01996 345 Gene3D DnaJ domain 3 125 IPR036869 -
Car06g01996 345 Gene3D - 247 327 - -
Car06g01996 345 Gene3D - 167 245 - -
Car06g01996 345 SUPERFAMILY HSP40/DnaJ peptide-binding domain 162 257 IPR008971 GO:0006457|GO:0051082
Car06g01996 345 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 342 - -
Car06g01996 345 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 342 - -
Car06g01996 345 PRINTS DnaJ domain signature 6 24 IPR001623 -
Car06g01996 345 PRINTS DnaJ domain signature 24 39 IPR001623 -
Car06g01996 345 PRINTS DnaJ domain signature 42 62 IPR001623 -
Car06g01996 345 PRINTS DnaJ domain signature 62 81 IPR001623 -
Car06g01996 345 SMART dnaj_3 3 62 IPR001623 -
Car06g01996 345 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Car06g01996 345 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01996 Car-Chr6 19932632 19934911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01996 5 69 C2H2 Transcription Factor Family AT1G74250 36.232 1.56e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01996 K09510 - gmx:100797487 583.563