Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01992 ATGCTAAAAAAGATGGATGAAATAGAAATCACAAATGGTTTCCCTCAAAACTCACAAGGTACATCTAATAATCCTCCAACTTTGAAGAGAAAGAGAAACCTCCCGGGAAATCCAGATCCTGAAGCAGAAGTGATAGCTTTATCACCAAAGACACTGATGGCTACAAACAGATTCTTATGTGAAACATGTGGAAAAGGTTTTCAAAGAGATCAAAATCTTCAACTCCATAGACGTGGACACAACCTTCCATGGAAACTTAAGCAAAGAACAAACAAAGAAGCAAAGAAGAGAGTTTATGTGTGTCCAGAGAAGACTTGTGTTCACCATGATCCTTCAAGGGCACTTGGTGACTTAACTGGGATAAAAAAGCACTTTTGTAGAAAGCACGGTGAAAAGAAGTGGAAGTGTGAGAAGTGTTCAAAACGTTATGCTGTTCAGTCTGACTGGAAAGCTCACTCAAAAACATGTGGTACTAGAGAATACAAATGTGATTGTGGAACTATCTTTTCAAGGAGAGATAGCTTCATAACTCATAGAGCCTTTTGTGATGCATTGGCAGAAGAAACAGCAAGAGTAAGTGCAGCATCAGAAATAAACAACAATATTAGTTACAATAACATAATGGGAACATCTCTAGTCCCTAACAACAACATGGCAAACCATTTTTCTTCAATTTTCAAACCAATTGATGAAACAACAAATATTCAAACTAGAGGACTATCCCTTTGGATGAGTACTCAATCATCTCAACCTCATGAAACAATGATAACCACCACAAATGGTAATAATTTGCATGAGATTCATCATCAACTTGGTTCATCCACAAACACATCATCTAGAGGAATATTATATAGTGGAAATATTGAAAATCCACTTGTCCAATGCTCAAACACAAATCCTCCACCAAACTCAAATAATTATCACCTAAATTGGGTTTTTGGAACTAAACTTCCCTCCAATTGTAGTGAAGAACTAATTACTAGTACTACCACTTCACTTCCGCTACGAAATAATATTAATATTGATGATGTTCCTCGTTCTGCTTCCTTGTATAGCTCACAACACCAATTGCAACCACATCAAAATCAAACATCAAACATGTCAGCTACAGCTTTGTTACAGAAAGCTGCTCAAATTGGAGCAACAACCTCAACTGATCCATCATTCCTTGGAAGTTTAGGTTTGAAATGTAGTAACACTACTACTAATATTGATGGTAACAAATTTGGTGGTGGCATGTATGGTTCAAGTTCTTTGCTTATTAGTCTTGCTAGTGGAGAAGATCGTAACTCTGGATGTGATTTGTCACAAATGCACCCTTCTAAACGTAGACATGTGCAGAGTGAAGAAAATGGTGGAGGGCAAACTAGGGATTTTCTTGGTGTTGGTGTGCAAACTATTTGCCACCCTTCTTCAATCAACGGATGGATTTGA 1434 0.3738 MLKKMDEIEITNGFPQNSQGTSNNPPTLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEAKKRVYVCPEKTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVSAASEINNNISYNNIMGTSLVPNNNMANHFSSIFKPIDETTNIQTRGLSLWMSTQSSQPHETMITTTNGNNLHEIHHQLGSSTNTSSRGILYSGNIENPLVQCSNTNPPPNSNNYHLNWVFGTKLPSNCSEELITSTTTSLPLRNNINIDDVPRSASLYSSQHQLQPHQNQTSNMSATALLQKAAQIGATTSTDPSFLGSLGLKCSNTTTNIDGNKFGGGMYGSSSLLISLASGEDRNSGCDLSQMHPSKRRHVQSEENGGGQTRDFLGVGVQTICHPSSINGWI 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01992 477 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 474 - -
Car06g01992 477 MobiDBLite consensus disorder prediction 1 41 - -
Car06g01992 477 Gene3D Classic Zinc Finger 127 194 - -
Car06g01992 477 MobiDBLite consensus disorder prediction 11 30 - -
Car06g01992 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Car06g01992 477 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Car06g01992 477 PANTHER F-BOX ASSOCIATED PROTEIN 12 474 - -
Car06g01992 477 Gene3D Classic Zinc Finger 37 111 - -
Car06g01992 477 MobiDBLite consensus disorder prediction 436 456 - -
Car06g01992 477 SUPERFAMILY beta-beta-alpha zinc fingers 57 154 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01992 Car-Chr6 19899139 19901793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01992 24 477 IDZ Gene Family AT1G03840 52.071 2.42e-147 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car06g01992 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01992 K25870 - gmx:100790620 597.43