Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01988 ATGGCCCAAAGTGAAGAGCATGCTACAAAACTTCTTCAAGCTCAAACTCAAGTATTCAATCAAATTTTCAGTTTCATAAACTCAATGTCCCTTAAATGTGCAATTGAATTATCCATACCAGATATCATACACAACTATGGCCAACCCATCCCACTCTCACAACTCATTTCTTCATTACCAATCCACCCTTCTAAATCCGGCGACATCGATCGCTTGATGCGAGTCTTAACTCATTCTAATTTCTTCATTGTCACTAAAAATGAACTAGAAGTAATGTATGAACTCACTGATGCATCTAGATTATTGCTTAAGGACCATCCCTTTAGTATGACATCAATGTTACATGTTATACTTGGTCCAATTATGAGTAAACCATGGCATCAACTTTCTAATTGGTACAAAAATGAAGACCCTTCACCTTTTTACACTGAAAATAATGGGATTGAGTTTTGGGATTATGCTGGCCATGATCCTGAATTCAATCACTTGTTTAATGAAGCTATGGCTTGTGAAACTAGAATGGCTTCTACTGTGGTGATGGGGAAATGTAAAGGGGTGTTTCAGGGTTTGGAATCATTGGTTGATGTTGGAGGAGGCATAGGGACTATGTCTAAGGCCATTGCTAAGTCATTTCCAAACATTGAGTGTATTGTATTTGATCTCCCACATGTTGTTGATGGATTGCAAGGAAGTGAAAACTTCAAATATGTTGCAGGTGACATGTTTGAGTCAATTCCTCCTACCCAATCAATTTTACTCAAGGGTGTATTACATGACTGGAATGATGAAGAATGTTTGAAAATACTAAAGAAATGCAAGGAGGCAATCAAGAGCAAAGGTAAAGAAGGGAAAGTGATAATCATAGACGCAGTGATGGGGAATGAGAAAGCAGACAACGAATCATTTGAAGCACAATTGTTCTATGATTTGGAGATGATGGTGTTGGTTAATGGAAAAGAGAGAAATGAGAAGGAATGGTCTAAGTTGTTTTTCTCTGCTGGTTTCAATAACTACAAGATAACTCATGGTCTTGGTTTTAAGTCTCTCATCGAGGTTTTTCCATAG 1065 0.3756 MAQSEEHATKLLQAQTQVFNQIFSFINSMSLKCAIELSIPDIIHNYGQPIPLSQLISSLPIHPSKSGDIDRLMRVLTHSNFFIVTKNELEVMYELTDASRLLLKDHPFSMTSMLHVILGPIMSKPWHQLSNWYKNEDPSPFYTENNGIEFWDYAGHDPEFNHLFNEAMACETRMASTVVMGKCKGVFQGLESLVDVGGGIGTMSKAIAKSFPNIECIVFDLPHVVDGLQGSENFKYVAGDMFESIPPTQSILLKGVLHDWNDEECLKILKKCKEAIKSKGKEGKVIIIDAVMGNEKADNESFEAQLFYDLEMMVLVNGKERNEKEWSKLFFSAGFNNYKITHGLGFKSLIEVFP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01988 354 SUPERFAMILY "Winged helix" DNA-binding domain 9 107 IPR036390 -
Car06g01988 354 PIRSF O-mtase 1 354 IPR016461 GO:0008168
Car06g01988 354 PANTHER O-METHYLTRANSFERASE 5 354 IPR016461 GO:0008168
Car06g01988 354 Gene3D Vaccinia Virus protein VP39 103 354 IPR029063 -
Car06g01988 354 Gene3D - 1 102 IPR036388 -
Car06g01988 354 Pfam Dimerisation domain 29 77 IPR012967 GO:0046983
Car06g01988 354 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 19 354 IPR016461 GO:0008168
Car06g01988 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 107 352 IPR029063 -
Car06g01988 354 Pfam O-methyltransferase domain 126 336 IPR001077 GO:0008171
Car06g01988 354 PANTHER ORCINOL O-METHYLTRANSFERASE 5 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01988 Car-Chr6 19858818 19860774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01988 29 353 Monolignol Biosynthesis Gene Families AT5G54160 32.036 1.86e-49 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01988 - K16040 gmx:100807238 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01988 06 19858818 19860774 Car06g01988 06 19858818 19860774 ECH