Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01984 ATGAAGAAAAATAAGAGCAAGAATTCAAAATCAGGGGGTTTTGAATCCCTAGGTCTGAATCCCAACGTGTTCAGAGGAATCAGGCGTAAAGGTTACAAAGTCCCCACTCCAATTCAGAGGAAGACAATGCCCCTCATCCTCTCTGGTATCGATGTCGTTGCTATGGCTCGTACCGGTTCCGGTAAAACGGCTGCGTTTCTTGTTCCCATGCTTCACCGCCTTAATCAACATCTTCCTCAGGGTGGTGTTAGAGCCCTCATTTTATCTCCAACTAGGGATTTGGCTCTTCAAACTCTCAAGTTCACCCAAGAGCTTGGTCACTTCACAGACCTTCGTATTAGTTTGTTAGTTGGAGGTGATAGTATGGAAAGCCAGTTTGAGGAGTTGGCTCAGAGTCCAGACATTATTATTGCCACTCCTGGTAGGCTCATGCACCATCTGTCTGAGGTCGATGACATGTCCTTGCGTAAGGTCGAGTATGTTGTTTTTGATGAGGCAGATTGTTTGTTTGGTATGGGTTTTGCTGAGCAGTTACATCAAATTCTTGCTCAGCTCGGTGACAACCGTCAGACCTTGCTTTTCAGTGCCACATTACCCAGTGCTCTTGCCGAATTTGCCAAGGCCGGTCTGCGAGACCCCCGCCTTGTTCGCCTTGATTTGGAAACTAAAATTAGTCCTGACTTGAAGCTTGCCTTTTTCACTTTGAGGCAGGAAGAGAAGTATGCTGCTTTGCTCTATTTAATCAGAGAGATTATTGGTTCTGATGAGCAGACTTTAATTTTTGTATCCACTAAACATCATGTCGAGTTTCTCAACTCGTTGTTTCGACAAGAGGGCATTGAACCTTCAGTATGTTATGGTGCCATGGATCAAGATGCTCGCAAAATCAATGTATCAAGGTTTAGGTCAAGAAAGACAATGTTGTTGATTGTCACTGACATTGCTGCTCGTGGCATTGACATTCCATTACTTGATAATGTTATCAATTGGGACTTTCCTTCCAAGCCTAAAATATTTGTTCATCGAGTTGGAAGGGTTGCAAGAGCTGGTCGTACTGGTACTGCTTATTCTTTCTTGACTTCGGAGGATATGGCTTACCTCTTAGACCTTCATTTGTTTCTCTCAAAACCAGTCAGAGCTGCTCCCACTGAAGAAGAGGTCTTGCAGGATATGGATGGGGTAAGGTCAAGAATTGACCAAGCAATGGCAAAAGGAGAAACGATTTATGGCCGTTTCCCTCAAAAACTCATTGACCTTGTTTCTGACAGAGTTAGGGAAGTTATTGATACTTCTGCGGAGCTGGAAGCGTTGCAGAGAGCCTGTAACAATGCATTCCGTTTATATTCAAAAACAAAACCCTTACCCGCAAAGGAGTCCATTAGAAGAGTAAAGGATTTGCCCCGTGAAGGTCTGCATCCGATTTTCAACAATGTGTTGGGAACGGGGGAGTTAACTGCACTTGCATTTTCGGAGCATTTGAAAAAGTTTAGGCCAAAGCAAACCATTTTGGAAGCGGAAGGAGAAGCAGCTAAATCCAAGCGTATGGCGGGGGCTTCTGGTCAATGGGCTGATGTGATGAAAAGGAAAAGAGCTATTCATGAGAATATTATAAACTTGGTTCATGAACACAATTCTAAAAGTACTATGGAAAAGGAGGACGATGAATCGCAATTTACTTTTTCTGCGGAGAAAGGGAGAAAAGCACGTGGTTCTAAGAGAAAGCCACAAAGTTTCATGGATGAAGATAACTATATAAGTTCCATACCTAAAAATCAGCACATGGAGGCAGGCCTCTCTGTAAAAGGCAATGAAGGCTTTTCTTCAAATAGATTGGAAGAAGCTGTCTTAGATCTAGTTGCAGATGATGGTGCTGGCATTAAGAAACAAAGATCTGTATTTCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGTGACCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACAAAGGCCAACAAGACTGGCATATATAAAAAGTGGAAGGATCGCTCACACTCCAAGATATCTCTTAAAGGGACAAGTACCGATGGTGATGCTCAGGAATCAACAAGTTTCAAAGGATCCTACCGAGGAGGTGCCAGGAATTTTAGAGGCGGCAAGAAACAGCATTCAATGCCCAATGCTCATGTGCGTTCTGAAATCAAAGATATGGATCAAATTCGGAAGGAGAGGCAGAAGAAAGCGAGCAAAATTTCTTATATGAAGAGCAAATCGCCAAAGGGTAAAAAACCTGGCAGAAAAGGAAATAAAAGAAAATCTAAGTAG 2313 0.428 MKKNKSKNSKSGGFESLGLNPNVFRGIRRKGYKVPTPIQRKTMPLILSGIDVVAMARTGSGKTAAFLVPMLHRLNQHLPQGGVRALILSPTRDLALQTLKFTQELGHFTDLRISLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRKVEYVVFDEADCLFGMGFAEQLHQILAQLGDNRQTLLFSATLPSALAEFAKAGLRDPRLVRLDLETKISPDLKLAFFTLRQEEKYAALLYLIREIIGSDEQTLIFVSTKHHVEFLNSLFRQEGIEPSVCYGAMDQDARKINVSRFRSRKTMLLIVTDIAARGIDIPLLDNVINWDFPSKPKIFVHRVGRVARAGRTGTAYSFLTSEDMAYLLDLHLFLSKPVRAAPTEEEVLQDMDGVRSRIDQAMAKGETIYGRFPQKLIDLVSDRVREVIDTSAELEALQRACNNAFRLYSKTKPLPAKESIRRVKDLPREGLHPIFNNVLGTGELTALAFSEHLKKFRPKQTILEAEGEAAKSKRMAGASGQWADVMKRKRAIHENIINLVHEHNSKSTMEKEDDESQFTFSAEKGRKARGSKRKPQSFMDEDNYISSIPKNQHMEAGLSVKGNEGFSSNRLEEAVLDLVADDGAGIKKQRSVFHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKANKTGIYKKWKDRSHSKISLKGTSTDGDAQESTSFKGSYRGGARNFRGGKKQHSMPNAHVRSEIKDMDQIRKERQKKASKISYMKSKSPKGKKPGRKGNKRKSK 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01984 770 MobiDBLite consensus disorder prediction 747 770 - -
Car06g01984 770 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 43 216 IPR014001 -
Car06g01984 770 Pfam Helicase conserved C-terminal domain 240 350 IPR001650 -
Car06g01984 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 368 IPR027417 -
Car06g01984 770 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 12 40 IPR014014 GO:0003724
Car06g01984 770 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 243 389 IPR001650 -
Car06g01984 770 SMART DBP10CT_2 617 679 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Car06g01984 770 Gene3D - 1 219 IPR027417 -
Car06g01984 770 MobiDBLite consensus disorder prediction 545 578 - -
Car06g01984 770 MobiDBLite consensus disorder prediction 545 566 - -
Car06g01984 770 MobiDBLite consensus disorder prediction 677 770 - -
Car06g01984 770 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 2 767 - -
Car06g01984 770 MobiDBLite consensus disorder prediction 686 705 - -
Car06g01984 770 SMART ultradead3 31 238 IPR014001 -
Car06g01984 770 MobiDBLite consensus disorder prediction 722 746 - -
Car06g01984 770 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 2 767 - -
Car06g01984 770 SMART helicmild6 269 350 IPR001650 -
Car06g01984 770 CDD DEADc_DDX54 12 217 - -
Car06g01984 770 Gene3D - 231 454 IPR027417 -
Car06g01984 770 Pfam DBP10CT (NUC160) domain 617 678 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Car06g01984 770 Pfam DEAD/DEAH box helicase 36 203 IPR011545 GO:0003676|GO:0005524
Car06g01984 770 CDD SF2_C_DEAD 238 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01984 Car-Chr6 19810337 19818569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01984 14 383 Eukaryotic Initiation Factors Gene Family AT1G72730 33.065 3.05e-59 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01984 K14808 - gmx:100806274 1277.31