Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01981 ATGGCGGGTCCTCTTCTTCTTCGTTCTCTCTGGTCCTCAACCAGAAAATCATTTACCTCCACTTCTTCACGTTTctctccatctccctctcgtttcttctcccgctccttctccgctgctcccgccgctgcttcttcttctgatcccgcCGGATCTCTCGACCCCGCCCGCCTCCGCAACGTCGCGGTTATTGCTCATGTCGACCACGGCAAGACGACTCTCATGGACCGCCTGCTCCGTCAGTGCGGCGCCGATATCCCACACGAGCGCGCCATGGATTCTAATTCCCTCGAACGCGAACGCGGTATCACCATCGCTTCCAAGGTTACCTCTATTGCGTGGAAAGAAAATGAGCTGAACATGGTGGATACCCCTGGACATGCTGATTTTGGCGGTGAGGTTGAACGTGTAGTTGGTATGGTTGAAGGAGCAGTTTTGGTTGTTGATGCAGGGGAAGGTCCACTTGCCCAAACTAAGTTTGTTCTTGCAAAAGCCTTGAAGTATGGGTTGCGACCTATTCTTCTTTTAAACAAAGTAGACCGACCTGCAGTTACTGAGGAGATATGCGATGAAGTTGAGAGTCTGGTGTTTGATCTATTTGCAAACCTGGGTGCTACAGAGGAGCAACTTGATTTCCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCCAGCACCTTTACCAAGGATCCTCCTGCTGAGGCAAAAAATATGTCACAATTACTTGATGCCATTGTATCACATGTCCCTTCGCCAAATGCAAACATTGATGCACCTTTCCAAATGCTGGTTTCAATGATGGAACGAGACTTTTATCTTGGGCGGATCTTGACTGGACGTGTGTATTCTGGCGTTGTTCGTGTTGGTGACAGGGTTCACGGACTACGTAACAAAGATTCTGGTGCTGAAAAGATTGAAGAGGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGTACAGCCATGGTTCTAATTGATAGTGCTGGAGCTGGCGATATAATTTCAATTGCTGGTTTGGCAAGTCCATCGATAGGCCATACAGTTACAACTGTGGAGATTATGTCTGCATTACCGACAGTAGTATTGGATCCCCCAACAATTTCTATGACCTTTGGTGTAAACGACTCCCCGTTAGCTGGCCGTGATGGTACTCATTTGACTGGGGGAAAAATTGGCGATCGACTGATGGCTGAAGCTGAAACCAACCTTGCCATAAATGTCCTGCCAGGCTTGTCAGAAACATATGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGGTATTTTAATTGAGAATATGAGGCGCGAGGGATTTGAGCTATCTGTCTCTCCACCTAAAGTCATGTATAAAACAGAAAATAGTCAGAAACTTGAGCCAATAGAAGAAGTTACAATTGAGGTAAATGATGAGCACGTTGGCTTTGTAATGGAGGCCTTGTCTCACAGACGAGCTGAAGTTACTGACATGGGTCCTGTTGCGGGAACTGTTGGTCGAACTAGATTGTCTTTGACTTGTCCATCAAGGGGCCTGGTTGGTTACAGGAGTGTGTTCAGCAGTGAGACACGTGGAACTGGGTTTATGCACCGTGCTTTCCTCACATATGAAAAATTTCGAGGCCCTCTTGGCAATGTGAGGAAAGGAGTACTGGTGTCAGTGGGTTATGGTCCAATCACTTCTCATGCATTGATGAGCTTAGAAGCTCGTGGGACTCTTTTTGTAACTCCTGGAATGGAGACTTATGATGGAATGATTGTTGGAGAACATTCACGGGATACAGATCTTGATGTCAATCCAGTGAGGGCTAAAGCACTTACAAATATACGATCTGCTTCCAAGGATGAGAATGTGAAGCTGACTCCTCCTCGCCTTATGACACTTGAAGAAGCTATAGGGTATGTAGCTTCAGATGAGCTTATTGAGGTTACACCAAAGACTATCAGGTTACGGAAGAAATACCTTGATGCTAACAAGCGTAAAACCATGAGTAGAAAGCCAAAGGAATGA 2001 0.4438 MAGPLLLRSLWSSTRKSFTSTSSRFSPSPSRFFSRSFSAAPAAASSSDPAGSLDPARLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSNSLERERGITIASKVTSIAWKENELNMVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVTEEICDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASSTFTKDPPAEAKNMSQLLDAIVSHVPSPNANIDAPFQMLVSMMERDFYLGRILTGRVYSGVVRVGDRVHGLRNKDSGAEKIEEGKVVKLMKKKGTAMVLIDSAGAGDIISIAGLASPSIGHTVTTVEIMSALPTVVLDPPTISMTFGVNDSPLAGRDGTHLTGGKIGDRLMAEAETNLAINVLPGLSETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENSQKLEPIEEVTIEVNDEHVGFVMEALSHRRAEVTDMGPVAGTVGRTRLSLTCPSRGLVGYRSVFSSETRGTGFMHRAFLTYEKFRGPLGNVRKGVLVSVGYGPITSHALMSLEARGTLFVTPGMETYDGMIVGEHSRDTDLDVNPVRAKALTNIRSASKDENVKLTPPRLMTLEEAIGYVASDELIEVTPKTIRLRKKYLDANKRKTMSRKPKE 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01981 666 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 5 665 - -
Car06g01981 666 PRINTS GTP-binding elongation factor signature 120 130 IPR000795 GO:0003924|GO:0005525
Car06g01981 666 PRINTS GTP-binding elongation factor signature 136 147 IPR000795 GO:0003924|GO:0005525
Car06g01981 666 PRINTS GTP-binding elongation factor signature 100 108 IPR000795 GO:0003924|GO:0005525
Car06g01981 666 PRINTS GTP-binding elongation factor signature 60 73 IPR000795 GO:0003924|GO:0005525
Car06g01981 666 PRINTS GTP-binding elongation factor signature 172 181 IPR000795 GO:0003924|GO:0005525
Car06g01981 666 Gene3D Translation factors 255 359 - -
Car06g01981 666 CDD BipA_TypA_II 261 358 - -
Car06g01981 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 263 IPR027417 -
Car06g01981 666 Gene3D - 448 542 - -
Car06g01981 666 Pfam Elongation factor Tu GTP binding domain 57 252 IPR000795 GO:0003924|GO:0005525
Car06g01981 666 Gene3D bipa protein 543 658 IPR042116 -
Car06g01981 666 TIGRFAM small_GTP: small GTP-binding protein domain 59 194 IPR005225 GO:0005525
Car06g01981 666 Gene3D - 56 254 IPR027417 -
Car06g01981 666 CDD TypA_BipA 58 253 - -
Car06g01981 666 PANTHER ELONGATION FACTOR FAMILY PROTEIN 5 665 - -
Car06g01981 666 Pfam Elongation factor Tu domain 2 275 349 IPR004161 GO:0005525
Car06g01981 666 CDD BipA_III 365 442 - -
Car06g01981 666 Pfam Elongation factor G C-terminus 455 538 IPR000640 -
Car06g01981 666 Coils Coil 663 666 - -
Car06g01981 666 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 93 108 IPR031157 -
Car06g01981 666 SUPERFAMILY Translation proteins 203 358 IPR009000 -
Car06g01981 666 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 58 658 IPR006298 GO:0005525
Car06g01981 666 CDD BipA_TypA_C 457 537 IPR035651 -
Car06g01981 666 SUPERFAMILY EF-G C-terminal domain-like 363 446 IPR035647 -
Car06g01981 666 Gene3D Elongation Factor G (Translational Gtpase), domain 3 366 650 - -
Car06g01981 666 SUPERFAMILY EF-G C-terminal domain-like 457 573 IPR035647 -
Car06g01981 666 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 56 254 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01981 Car-Chr6 19781156 19793314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01981 57 181 Eukaryotic Initiation Factors Gene Family AT3G22980 42.748 6.43e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01981 K06207 - gmx:100789218 1119.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01981 06 19781156 19793314 Car06g01981 06 19781156 19793314 ECH