Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01980 ATGCTTCTCCTACACAAAACAATATTGCTTTTTCTATGTTATTTATACTTATTCGTTCTTCATTGCTTCAAAGACAATAACATTTTTCCAAGGATGCAAACAAGTAACAATAATAATGGAATGCATCAAGCGTGTGCAGCATGCAAGCATCAAAGAAAAAAATGCAGTGAAAATTGTATATTGGCACCTTATTTTCCATCGAACAGAAATTGTGACTTCAAAGCGGTGCACAAGGTTTTCGGTGTTAGCAACATAACGAAATTGGTAAAGAATGTTCAAGAATCAGATAGAAGAAGAGTGGTTGATTCATTGATATGGGAAGCATCATGTAGACAAAGAGATCCAATACATGGTCCTTATGGTGAGTATACAAAAGTTTACAATGAGTATAGAAAAGTTTATGATGAACTTAATATATTAAGAGAACATCAAAATCAATTATTGCAAATGCCACCTCAAGGATTAAGATCGGTACAAGATTTGATTGCATGTAACGGAACTCAAAGCAAATCAGCTGCTCATAATGCAATTAATTATCTTCATTCTGATCATAACATGAATGCTTCTACCATTTACAATGCATACCGTGCAAATTATTTACAAAATATTGAGAATGTGAGGACCGAAGTTGTTATCCCATTTCAGCATCAACACTCACAACCACAAGCATATTATATTACAGGTGATGGATTCAATCAGTGA 702 0.3362 MLLLHKTILLFLCYLYLFVLHCFKDNNIFPRMQTSNNNNGMHQACAACKHQRKKCSENCILAPYFPSNRNCDFKAVHKVFGVSNITKLVKNVQESDRRRVVDSLIWEASCRQRDPIHGPYGEYTKVYNEYRKVYDELNILREHQNQLLQMPPQGLRSVQDLIACNGTQSKSAAHNAINYLHSDHNMNASTIYNAYRANYLQNIENVRTEVVIPFQHQHSQPQAYYITGDGFNQ 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01980 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN 2 34 206 - -
Car06g01980 233 Pfam Lateral organ boundaries (LOB) domain 44 140 IPR004883 -
Car06g01980 233 ProSiteProfiles LOB domain profile. 43 144 IPR004883 -
Car06g01980 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01980 Car-Chr6 19776746 19779821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01980 42 137 AS2 family AT1G06280 58.333 2.88e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Car06g01980 LOB 5.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01980 - - gmx:100809173 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01980 06 19776746 19779821 Car06g01980 06 19776746 19779821 ECH