Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01961 ATGGAAATGGAAGATTTTGATTGGAGTTATGATATACTTGGAGATGGTTTTCAAGTAAACAATGAAGTATTTGGAAGTGGGTATGGTTCATCTTTCTCTTTGGTTTTGGATAGGGAGAGAGATGAGCTTGTGGAAGCACCTGCTAAAATGGAGAAAAAGGGTGTGTCTAATGAGAGAAGCATTGAAGCTTTGAAGAACCATAGTGAAGCAGAGAGAAGGAGACGAGCTAGGATTAATGCACATCTTGATACACTTCGCAGTGTGATTCCAGGTGCTTTGAAGATGGACAAAGCATCATTACTTGGTGAGGTAATTCTACATTTGAAAGAGCTAAAAAGGAATGCAGCACAAGCATGTGAAGGTTTAATAATACCAAAGGACAATGATGAAATAAGTGTTGAAGAACAAGAAGGTGGAATATATGGTTTTCCTTTTTCAATTAGAGCATCACTATGTTGTGAATATCAACCAGGGTTATTGTCTAATATAAGACAGGCACTAGAATCTCTTCATCTCATGATCATGAAGGCAGATATTGCAACTTTTGGAGGAAGGATGAAGAATGTCTTTGTGGTAATTAGTTGTGAGGAACAGAACTTGGATGTTGCTGAATACAGACAGTTTCTTGCTGGATCTGTTCATCAAGCTCTTAAGTCTGTACTCAATAGATTTTCTGTTTCACAAGACATGTTAGGAGCTAGAAAAAGGAGGAGGATTTCTATATTTAGTTCTTCATCTTTAGAAGATTTCTTATAA 756 0.369 MEMEDFDWSYDILGDGFQVNNEVFGSGYGSSFSLVLDRERDELVEAPAKMEKKGVSNERSIEALKNHSEAERRRRARINAHLDTLRSVIPGALKMDKASLLGEVILHLKELKRNAAQACEGLIIPKDNDEISVEEQEGGIYGFPFSIRASLCCEYQPGLLSNIRQALESLHLMIMKADIATFGGRMKNVFVVISCEEQNLDVAEYRQFLAGSVHQALKSVLNRFSVSQDMLGARKRRRISIFSSSSLEDFL 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01961 251 PANTHER TRANSCRIPTION FACTOR BHLH30 1 251 IPR045847 GO:0003700|GO:0006355
Car06g01961 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 115 IPR036638 GO:0046983
Car06g01961 251 Pfam Helix-loop-helix DNA-binding domain 66 111 IPR011598 GO:0046983
Car06g01961 251 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 251 - -
Car06g01961 251 Gene3D - 57 119 IPR036638 GO:0046983
Car06g01961 251 SMART finulus 68 117 IPR011598 GO:0046983
Car06g01961 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 111 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01961 Car-Chr6 19598789 19601109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01961 48 240 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 41.624 1.96e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car06g01961 HLH 6.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01961 - - gmx:100788819 364.77