Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01941 ATGTCTGGTGGCCCTATTTCTCAGGATTGGGAACCCGTCGTCATCCGCAAGAAAGCTCCCAACGCTGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCTCGCCGTGCCGGCGCCGATATCGATACCGTCAAGAAACATAATGCTGGAACAAACAAAGCTGCCTCTAGTAGCACTTCATTGAACACTAAAAGGCTGGATGATGATACGGAGAATCTTGCTCATGACCGTGTACCAACTGAACTGAAGAAGGCTATAATGCAAGCTAGGATGGACAAGAATCTTACTCAGGCTCAGCTTGCTCAAATAATCAATGAGAAGCCTCAAGTGATCCAAGAATACGAGTCAGGGAAAGCCATTCCAAACCAGCAGATAATTGGCAAGTTGGAGAGAGCCCTTGGAGCTAAACTGCGTGGCAAGAAATGA 426 0.4883 MSGGPISQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGADIDTVKKHNAGTNKAASSSTSLNTKRLDDDTENLAHDRVPTELKKAIMQARMDKNLTQAQLAQIINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01941 141 Pfam Multiprotein bridging factor 1 8 78 IPR013729 -
Car06g01941 141 Gene3D - 70 141 IPR010982 GO:0003677
Car06g01941 141 MobiDBLite consensus disorder prediction 49 63 - -
Car06g01941 141 PANTHER MULTIPROTEIN BRIDGING FACTOR 1B 1 141 - -
Car06g01941 141 SUPERFAMILY lambda repressor-like DNA-binding domains 79 137 IPR010982 GO:0003677
Car06g01941 141 Pfam Helix-turn-helix 86 136 IPR001387 -
Car06g01941 141 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 141 - -
Car06g01941 141 MobiDBLite consensus disorder prediction 46 76 - -
Car06g01941 141 CDD HTH_XRE 84 134 IPR001387 -
Car06g01941 141 ProSiteProfiles Cro/C1-type HTH domain profile. 86 140 IPR001387 -
Car06g01941 141 SMART mbf_short4 85 140 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01941 Car-Chr6 19394346 19397446 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Car06g01941 MBF1 1.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01941 K03627 - gmx:100500420 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01941 06 19394346 19397446 Car06g01941 06 19394346 19397446 ECH