LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car06g01936	ATGATGTCCAGATCATATACAAACCTTTTAGATTTGGCTTCTGGGAATTTCCCGGCAATGGGATCGGGGAGGGAGTTTAAAGAACGAAGGCGGTTGCCGAGGGTAATGAGTGTCCCTGGGATTGTCTCAGAGCTCGATGATGATCAGGCAGTAAGTGTTTCTTCTGATAATCCGTCAACTATTTCTACTGATCGAATTATCATTGTAGCCAACCAGCTACCTTTGAAAGCAAAGCGAAGAGAGGACGACAAAGGGTGGAGTTTTAGTTGGAATGAGGATGCCTTGCTCTTACAGCTTAAGGATGGATTTCCAGAAGAGATGGAGGTTCTTTATGTTGGGTCTTTGCGCATTGACATTGATCCCGCTGAACAAGACGATGTGTCGCAATATTTATTAGATAAATTTAAATGTGTCCCTACTTTTCTACCTCCAGATGTTTTGGCAAAATTTTATGATGGCTTCTGCAAAAGGCAGTTGTGGCCACTTTTTCATTACAAGCTACCATTTTCAACAGATAAAAGTCACCGTTTTGATCGCTCTTTGTGGGAAGCCTATGTTCTGGCAAACAAGCTTTTCTTTCAAAAGGTAGTAGAAATAATAAACCCCGAGGATGACTATATTTGGGTTCATGATTACCATTTGATGGTGCTGCCGACTTTTCTAAGAAGGCGTTTTAACAGGGTTAAAATGGGGTTTTTCTTGCATAGCCCCTTTCCATCATCAGAGATATATAGGACTCTTCCTGTCAGGGAAGAGATAATGAAAGCTTTACTAAATTCGGACATCATTGGATTCCATACTTTTGACTATGCTCGTCACTTCCTTTCCTGTTGCAGTCGTATGTTGGGTCTAGAGTATCAGTCAAAGAGGGGCTATCTAGGGTTGGAATATTATGGGAGGACTATCAGTATTAAGATCATGCCTGTTGGGATTCACATGGGTCGGATTGAGTCTGTTATGAGAATGGCGGATGAGGAGTGTAAGGCAAGGGAGCTCAGACAACAATTTGAAGGAAAAACTATTTTGCTTGGTATTGACGATATGGACATTTTTAAAGGCATAAATTTGAAGATTTTGGCTATGGAGCAGATGCTCAAACAACACCCCAAATGGCAAGGAAGAGCTGTTTTAGTCCAGATAGTTAATCCTGCTAGAGGTAAAGGGATACATGTAGATGAGATACATAGTGAAATACAAGAAAGCTGCAGCAGGATCAACAGAGTGTTTGGACGACCTGGTTATGAACCTATTGTTTTTATTGATAGGTCGGTTCCAATTACTGAAAAAGTTGCCTTTTACAGCCTTGCCGAGTGTGTTATTGTCACTGCTGTAAGGGATGGGATGAACCTAACTCCTTATGAATATATCGTTTGTAGACAGGGAATATCTGGTTCTGAATCATCTTCCAATGTGAATGACCCAAAGAAGAGCATGCTTGTAATATCGGAATTTATTGGGTGTTCTCCATCACTTAGTGGGGCTATCCGTGTCAATCCATGGAATGTTGAAGCAACGGCAGAGGCAATGAATGAGGCCATTTCAATGGGTGATGGAGAGAAGCAGCTTCGGCATGAAAAGCATTATCGTTATGTCAGCACTCATGATGTGGCTTACTGGTCACGTAGTTTCTTGCAAGACATGGAGAGGGCTTGCACAGACCTTCTTAGGAAAAGATGTTGGGGAATAGGTCTTAGCTTTGGATTTAGAGTTGTGGCACTTGACCCTAACTTTAAAAAGCTCTCAATTGATGCTATGGTTTCAGCTTACAAGAGGGCAAAGAGTAGGGCCATTTTGTTGGACTATGATGGTACTGTGATGCCACAGAACTCTATTAATAAGAGTCCAAGCAGGGAGGTTATCTCTCTTTTGGAAAGTCTTTGTGCGGACCCCAAAAATGTAGTTTTCATTGTCAGCGGGCGGGGTAGAAATAgcttaagtgaatggtttactccctgcaaaaaacttggaattgctgcagaacatgggtacttcttgagGTGGTCCCAGAATGGAGAATGGGAAACTTGTGGTAACTGCTCCgattttggatggatgcagattgctgaacccgtaatgaaactatatacagaggcaaccgatggttccagcattgaacgaaaagaaagtgctttggtctggcaatacagggatgcagaccttggttttggatcttctcaggctaaggaaatgttagatcatctagaaagcgttttggccaatgagcctgttgctgcaaagagtggccaatttattgttgaagtgaaaccccaggatgtgagcaaaggcttagttgcggaaaagatattctcttcaatgtctgacagtggcaaacaagctgactttgtgctgtgtgttggggacgacagatcagatgaagacatgtttgaaatagttagtagtgcaatctcaagaaatattctttcctctaatgcttctgtatttgcttgcacggttggacaaaagccaagcaaagccaagtattatctggatgatacttctgaagtaatatgcatgctagaatCTTTGGCTGAAGAATCAGATTCTTCACCCTGCATAGGAGAAGATTCAGGGGATTCCTCTTGA	2583	0.3322	MMSRSYTNLLDLASGNFPAMGSGREFKERRRLPRVMSVPGIVSELDDDQAVSVSSDNPSTISTDRIIIVANQLPLKAKRREDDKGWSFSWNEDALLLQLKDGFPEEMEVLYVGSLRIDIDPAEQDDVSQYLLDKFKCVPTFLPPDVLAKFYDGFCKRQLWPLFHYKLPFSTDKSHRFDRSLWEAYVLANKLFFQKVVEIINPEDDYIWVHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEIMKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIESVMRMADEECKARELRQQFEGKTILLGIDDMDIFKGINLKILAMEQMLKQHPKWQGRAVLVQIVNPARGKGIHVDEIHSEIQESCSRINRVFGRPGYEPIVFIDRSVPITEKVAFYSLAECVIVTAVRDGMNLTPYEYIVCRQGISGSESSSNVNDPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISMGDGEKQLRHEKHYRYVSTHDVAYWSRSFLQDMERACTDLLRKRCWGIGLSFGFRVVALDPNFKKLSIDAMVSAYKRAKSRAILLDYDGTVMPQNSINKSPSREVISLLESLCADPKNVVFIVSGRGRNSLSEWFTPCKKLGIAAEHGYFLRWSQNGEWETCGNCSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADLGFGSSQAKEMLDHLESVLANEPVAAKSGQFIVEVKPQDVSKGLVAEKIFSSMSDSGKQADFVLCVGDDRSDEDMFEIVSSAISRNILSSNASVFACTVGQKPSKAKYYLDDTSEVICMLESLAEESDSSPCIGEDSGDSS	860

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car06g01936	860	CDD	HAD_TPP	596	835	-	-
	Car06g01936	860	Gene3D	Glycogen Phosphorylase B;	58	318	-	-
	Car06g01936	860	Gene3D	-	594	692	IPR023214	-
	Car06g01936	860	Gene3D	-	723	851	IPR023214	-
	Car06g01936	860	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED	1	855	-	-
	Car06g01936	860	Gene3D	Glycogen Phosphorylase B;	319	532	-	-
	Car06g01936	860	CDD	GT20_TPS	65	548	IPR001830	GO:0003824\|GO:0005992
	Car06g01936	860	Pfam	Glycosyltransferase family 20	65	548	IPR001830	GO:0003824\|GO:0005992
	Car06g01936	860	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	64	552	-	-
	Car06g01936	860	SUPERFAMILY	HAD-like	595	843	IPR036412	-
	Car06g01936	860	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	855	IPR001830	GO:0003824\|GO:0005992
	Car06g01936	860	TIGRFAM	T6PP: trehalose-phosphatase	592	843	IPR003337	GO:0003824\|GO:0005992
	Car06g01936	860	Pfam	Trehalose-phosphatase	598	833	IPR003337	GO:0003824\|GO:0005992
	Car06g01936	860	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	597	801	IPR006379	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car06g01936	Car-Chr6	19312175	19317788	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car06g01936	1	849	Trehalose Biosynthesis Gene Families	AT1G06410	77.974	0.0	1389

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car06g01936	K16055		-	gmx:100800847	1615.51