Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01925 ATGAACCGCAACATGAACAACTTCACGCCTTTGCCAGGGCTTTGGAGAACAGGTTCTAGATCCTATGATGCTCCTCAAACTTCCAATAATACGGAATTCAATGAAGTGCCTGTGTTTTACAGATCTCACTCTACTAGAGCCACTGATGAGAGGAATTTAGGGGCACAAGGTCCACTGCGATTGTGGGAAGTCAGAACTCCTACAGTACATCACCGTACACCAAATTTTCCATCACAGCCAAATAGAAGGCAACAACAAACTTATGCTCACAATGAGGACATAGGAAGGGGTTTCAACAACACCAGACTCCGAGAGATTTTCCAGCATACACCTTCAAGATCATCACAACAAACAAACACACAAGTTCCCCATTTGGTAGAAAATTCCAAATCTACTATTTTGAGCAAACTTAGGAAAGTCATATATGACCCTACGCCGAAGCGGTTAGCTCGAAGGTTGAGCTTGTATTATAGAGGCAATGCTGCAAATGATTTGAAAGATAGGGTGGAAGAAAAGAATGAAGATGGTATGAGATGTGCTATTTGCTTGGAAAATTTTGAGGCCACAGAAGAGGTGATGATTACTCCATGTAATCACATGTTTCATGAGGATTGTCTGGTAACTTGGTTGACAAGTAAAGGGCAGTGTCCTGTTTGTAGGTTTGTGATTTTTGAGGGAGTGAAGAGAGATTCTTCATCTTTGAATAGGAATGACATTGCCAATTTGGAACCCAATAACTTGATTTCTGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCATTTAGGCAGTGTGAATTACTGA 813 0.4121 MNRNMNNFTPLPGLWRTGSRSYDAPQTSNNTEFNEVPVFYRSHSTRATDERNLGAQGPLRLWEVRTPTVHHRTPNFPSQPNRRQQQTYAHNEDIGRGFNNTRLREIFQHTPSRSSQQTNTQVPHLVENSKSTILSKLRKVIYDPTPKRLARRLSLYYRGNAANDLKDRVEEKNEDGMRCAICLENFEATEEVMITPCNHMFHEDCLVTWLTSKGQCPVCRFVIFEGVKRDSSSLNRNDIANLEPNNLISGELLSILRAMEEAFHLGSVNY 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01925 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 235 IPR013083 -
Car06g01925 270 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Car06g01925 270 SUPERFAMILY RING/U-box 169 225 - -
Car06g01925 270 SMART ringv_2 178 220 IPR011016 GO:0008270
Car06g01925 270 SMART ring_2 179 219 IPR001841 -
Car06g01925 270 CDD RING-H2_PA-TM-RING 179 220 - -
Car06g01925 270 Pfam Ring finger domain 178 220 IPR001841 -
Car06g01925 270 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 2 270 - -
Car06g01925 270 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 2 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01925 Car-Chr6 19242097 19243867 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01925 128 266 C3H Transcription Factor Family AT3G58720 48.966 5.32e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01925 - K19041 gmx:100810607 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01925 06 19242097 19243867 Car06g01925 06 19242097 19243867 ECH