Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01911 ATGCAAGTGAGTGGCTGTTGGAAAACCAAGAACCCGAATTGGGGACAGCAACGAAAACAAGAAAGGAATTTGGGTTGTCACATCCTTGTGGAGAGAATCGGAAGGGGCATAATTGCAACTCCTTCGTGGTACTCTCAGAAATCTGATTCTGCCACCACCATTGCAGTAACCCGACTCAGTAGAAGGGTAGCTGCAAAAGATGGGTTATTAATTGAGCATTGGCCAACATACATGCTGCCTAAACGTCCACCGTCAGAACCACCAGACCTGGTTGGTAATATGGGACAGAAATTAGGGTTTCTGTATTTTCTCGCAGCTTGTTTCGGGTGCTCTCTTTCGTCAATCAACAGCAAAATGGATTCTCAAGTCAAGTATGCTTCTGTCGTCAAAGTTATTGGCCGTACCGGTTCTAGAGGACAGGTGACTCAAGTTAGGGTGAGGTTTAATGATGATCATACCCGTCTCATCACGAGGAACGTGAAAGGACCAGTCAGAGAAGGAGATGTCCTCACTCTACTCGAGTCTGAAAGAGAAGCAAGGAGGTTGAGATAG 552 0.462 MQVSGCWKTKNPNWGQQRKQERNLGCHILVERIGRGIIATPSWYSQKSDSATTIAVTRLSRRVAAKDGLLIEHWPTYMLPKRPPSEPPDLVGNMGQKLGFLYFLAACFGCSLSSINSKMDSQVKYASVVKVIGRTGSRGQVTQVRVRFNDDHTRLITRNVKGPVREGDVLTLLESEREARRLR 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01911 183 Hamap 30S ribosomal protein S28e [rps28e]. 119 183 IPR000289 GO:0003735|GO:0005840|GO:0006412
Car06g01911 183 CDD S1_S28E 124 183 IPR000289 GO:0003735|GO:0005840|GO:0006412
Car06g01911 183 PANTHER 40S RIBOSOMAL PROTEIN S28 119 183 IPR000289 GO:0003735|GO:0005840|GO:0006412
Car06g01911 183 SUPERFAMILY Nucleic acid-binding proteins 119 183 IPR012340 -
Car06g01911 183 Pfam Ribosomal protein S28e 122 182 IPR000289 GO:0003735|GO:0005840|GO:0006412
Car06g01911 183 ProSitePatterns Ribosomal protein S28e signature. 174 182 IPR028626 -
Car06g01911 183 PANTHER 40S RIBOSOMAL PROTEIN S28 119 183 - -
Car06g01911 183 Gene3D - 115 183 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01911 Car-Chr6 19036635 19040313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01911 119 183 Cytoplasmic Ribosomal Protein Gene Family AT5G64140 83.077 7.06e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01911 K02979 - mtr:MTR_4g081180 87.4261