Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01910 ATGGGGAAAAATAGCTTGTTTCGTTATGCAGATGGAGTGGATAAATTGTTGATGTTTTTTGGAACTCTAGGAAGCCTTGGAGATGGCCTGCAGAACCCTCTCATGATGTACATTCTTAGTGATGTGATTAATGCATATGGAGACAAGAATAGCCATTTAACACAGCATGATGTGAATAAGTATGCATCGAGGCTATTATGTGTTGCAGTTGGGGTTGGATTTTCGGCTTTTATTGAAGGAATATGTTGGACAAGAACAGCAGAGAGACAGGCTTCCAGAATGAGAATGGAATACCTAAAATCAGTCTTAAGACAAGAAGTTGGTTTCTTTGACACTCAGACTGCTGGTTCTTCAACAACTTACCAAGTTGTCTCACTCATTTCCTCAGATGCAAATACAATCCAAGCTGCCTTGTGTGAGAAGATACCAGACTGCCTGACTTACATGTCAACATTCTTATTCTGCCACATCTTTGCATTTGTACTTTCATGGAGACTTGCATTGGCAGCCCTACCACTCTCGGTCATGTTCATTGTTCCGGCGGTCGTGTTTGGGAAGATCATGTTGGATGTCACAATGAAAATGATCGAGTCTTATGGAGTTGCTGGTGGGATTGCAGAGCAAGCAATATCTTCAATAAGAACTGTTTTCTCTTATGTTGGGGAGAATCAAACAATAAAAAGATTCAGCAGTGCACTTCAAAAAACTATGGAATTTGGAATTAAGCAAGGTTTTGCAAAGGGGTTGATGTTAGGAAGTATGGGAGTTATTTATGTAAGTTGGGGTTTTCAAGCTTGGGTTGGAACATTTCTGATCTCTGAGAAAGGAGAGAAAGGTGGCCATGTATTTGTAGCTGGCTTCAACATCCTAATGGGGGGACTGAGCATATTAAGTGCACTTCCAAATTTAACTGCCATCATGGAGGCAAGTTCTGCGGTTACTCGCCTTTTCGAAATGATTGATAGGGTTCCAACTATAGATTCTGAAGAGAAGAAAGGAAAAGCTTTATCACATGTGAGAGGAGAAATTGAATTTAAAGACATATACTTCTGTTATCCATCTAGGCCAGATTCACCGGTGTTGCAGGAATTCAATCTCACTATTCCAGCAGGCAAGAGGGTAGGCCTAGTTGGAGGTAGTGGTTCAGGAAAATCCACTATAATTGCACTTCTTGAAAGGTTTTATGACCCTGTTGAGGGAGAAATACTCTTGGATGGTCACAAGATTAATAGACTTCAATTGAAATGGTTGAGATCTAACCTTGGCTTAGTGAATCAAGAGCCTGTTCTTTTTGCTACATCCATAAAAGAGAATATATTGTTTGGAAAAGAAGGGGCTTCAATGGAAAATGTTATAAGTTCAGCTAAAGCAGCAAATGCACATGATTTCATTGTTAAATTACCAGATGGATATGAAACTCAAGTTGGTCAGTTTGGATTTCAATTGTCTGGCGGACAGAAGCAGCGCATCGCTATAGCTAGAGCTTTACTTAGGGATCCAAAGGTTCTCCTACTTGATGAAGCAACAAGTGCACTTGACTCTCAATCTGAAAGAGTGGTACAAGCAGCAATTGATCAAGCTTCAAAAGGAAGGACAACAATCATCATTGCTCATCGCCTGTCTACAATAAGAACAGCGGACACAATTGCTGTGCTTCAGGCAGGCAGAGTCATTGAATCAGGTACTCATAATGAGCTCATAGAAATGAATGATGGACAAGGCGGAGAGTACGCTCGTATGGTAGAGTTGCAACAAATAACAACTCAGAACGATGAATCCAAACATTCCAATCTTCGTCAAATAGAAGGAAAGAGTTCCCACAGAATGAGCATTCCACAAAGTCCAGGAGTAAGTTTCAAATCAAGCACACCAGGCACTCCAATGTTGTATCCCTTCAGCCAGGGATTTTCGATAGGCACGCCTTACTCATATTCCATTCAATATGACCATGACGATGATAGTTTTGATGATAACTTGAAAAGATCAAACCATCCTGCTCCTTCGCAGTGGCGTTTGCTGAAAATGAACGCACCTGAGTGGGGAAGAGGAGTGTTAGGAGTATTGGGAGCAATAGGCTCAGGAGCAGTACAACCTATAAATGCATACTGTGTTGGGATACTTATATCAGTTTATTTTGAACCTGATACCTCTAAGATGAAGTCTAAAGCTAGAGTCTTGGCCCTCGTTTTCTTAGGAATTGGTGTTTTTAACTTCTTCACTAGTATTCTTCAACACTATAATTTCGCAATCATGGGAGAGAGGTTGACGAAAAGAATACGTGAGAAAATACTAGAAAAATTGATGACTTTTGAGATAGGATGGTTTGATCATGAAGATAACACAAGTGCAGCCATCTGTGCGAGGTTAGCCTCTGAAGCCAATTTGGTTCGTTCACTTGTTGGGGACAGGATGTCTCTTCTTGCTCAAGCGATTTTCGGGTCTGTCTTTGCCTACACTGTAGGACTTGTACTCACATGGAGACTTTCTCTTGTGATGATTGCAGTGCAGCCATTAGTCATAGGAAGCTTTTATGCAAGAAGTGTTTTGATGAAGACTATGGCGGAAAAAACTCGTAAGGCGCAAAGGGAAGGAAGCCAACTTGCAAGTGAAGCTGTTGTAAACCATAGAACCATAACTGCTTTCAGTTCTCAGAAAAGAATGTTGGCACTCTTCAAATCTACAATGACAGGCCCTAAAAAGGAGAGTATTAGGCAGTCATGGGTTTCAGGTTTTGGTCTTTTCAGCTCCCAATTTTTCAGCACTGCATCAACAGCATTGGCATATTGGTATGGTGGAAGGCTTCTTGTAGAAGGCCGCATTGAACCAAAGCATCTCTTCCAAGCATTTTTAATTTTGCTCTTCACTGCATACATCATTGCAGAAGCTGGAAGCATGACTTCTGACTTATCTAAAGGAAACAATGCAGTTGGATCGGTTTTCGCTATATTGGACAGGAAAAGTGAGATCGATCCTGAAACCTTATGGGGATCAGATAGAAAAAGAAAAATAAGGGGAAGGGTGGAGCTTAAAAGTGTATTCTTTGCCTATCCAAGTAGACCTGAGCAAATGGTATTCCAAGGCCTGAACCTCAAAGTTGAGGCTGGACAAACAATAGCACTTGTGGGGCACAGTGGTTGTGGTAAATCCACTATCATTGGTCTGATTGAAAGGTTTTATGATCCTGTCAAGGGAATGGTATGCATAGATGAACAGGACATCAAGTCCTATAATTTGAGAATGTTGAGGTCACATATTGCTTTGGTAAGTCAGGAACCAACCCTTTTCAGTGGAACCATTCGAGAAAACATCGCCTATGGAAAAGAAAATGCAACTGAATCTGAGATAAGAAGAGCTGCTACTCTCGCTAATGCTCATGAATTCATAAGTGGAATGAATGATGGATATGAAACATACTGTGGAGAAAGAGGAGTTCAGCTATCAGGAGGTCAGAAACAAAGAATAGCCTTAGCCAGAGCTATACTGAAGAATCCAGCAATTCTTCTTCTGGATGAAGCTACAAGTGCACTTGATAGTGCGTCAGAGGTTTTGGTCCAAGAAGCACTAGAGAAGATAATGATTGGAAGAACATGTATAGCAGTGGCGCATAGGCTATCTACAATACAGAAATCTAACTCAATTGCTGTGATTAAGAATGGGAAGGTTGTGGAACAAGGTTCACATAATGAATTGATTTCCCTTGGAAGAAATGGAGCTTATTATTCTCTTGTTAAACTTCAACGTGGTAGCTCACCTAGGTGA 3759 0.4092 MGKNSLFRYADGVDKLLMFFGTLGSLGDGLQNPLMMYILSDVINAYGDKNSHLTQHDVNKYASRLLCVAVGVGFSAFIEGICWTRTAERQASRMRMEYLKSVLRQEVGFFDTQTAGSSTTYQVVSLISSDANTIQAALCEKIPDCLTYMSTFLFCHIFAFVLSWRLALAALPLSVMFIVPAVVFGKIMLDVTMKMIESYGVAGGIAEQAISSIRTVFSYVGENQTIKRFSSALQKTMEFGIKQGFAKGLMLGSMGVIYVSWGFQAWVGTFLISEKGEKGGHVFVAGFNILMGGLSILSALPNLTAIMEASSAVTRLFEMIDRVPTIDSEEKKGKALSHVRGEIEFKDIYFCYPSRPDSPVLQEFNLTIPAGKRVGLVGGSGSGKSTIIALLERFYDPVEGEILLDGHKINRLQLKWLRSNLGLVNQEPVLFATSIKENILFGKEGASMENVISSAKAANAHDFIVKLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKVLLLDEATSALDSQSERVVQAAIDQASKGRTTIIIAHRLSTIRTADTIAVLQAGRVIESGTHNELIEMNDGQGGEYARMVELQQITTQNDESKHSNLRQIEGKSSHRMSIPQSPGVSFKSSTPGTPMLYPFSQGFSIGTPYSYSIQYDHDDDSFDDNLKRSNHPAPSQWRLLKMNAPEWGRGVLGVLGAIGSGAVQPINAYCVGILISVYFEPDTSKMKSKARVLALVFLGIGVFNFFTSILQHYNFAIMGERLTKRIREKILEKLMTFEIGWFDHEDNTSAAICARLASEANLVRSLVGDRMSLLAQAIFGSVFAYTVGLVLTWRLSLVMIAVQPLVIGSFYARSVLMKTMAEKTRKAQREGSQLASEAVVNHRTITAFSSQKRMLALFKSTMTGPKKESIRQSWVSGFGLFSSQFFSTASTALAYWYGGRLLVEGRIEPKHLFQAFLILLFTAYIIAEAGSMTSDLSKGNNAVGSVFAILDRKSEIDPETLWGSDRKRKIRGRVELKSVFFAYPSRPEQMVFQGLNLKVEAGQTIALVGHSGCGKSTIIGLIERFYDPVKGMVCIDEQDIKSYNLRMLRSHIALVSQEPTLFSGTIRENIAYGKENATESEIRRAATLANAHEFISGMNDGYETYCGERGVQLSGGQKQRIALARAILKNPAILLLDEATSALDSASEVLVQEALEKIMIGRTCIAVAHRLSTIQKSNSIAVIKNGKVVEQGSHNELISLGRNGAYYSLVKLQRGSSPR 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01910 1252 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 684 971 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car06g01910 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1002 1246 IPR027417 -
Car06g01910 1252 MobiDBLite consensus disorder prediction 602 622 - -
Car06g01910 1252 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 1247 - -
Car06g01910 1252 Gene3D - 997 1250 IPR027417 -
Car06g01910 1252 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1007 1243 IPR003439 GO:0005524
Car06g01910 1252 CDD ABC_MTABC3_MDL1_MDL2 343 584 - -
Car06g01910 1252 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 343 579 IPR003439 GO:0005524
Car06g01910 1252 ProSitePatterns ABC transporters family signature. 482 496 IPR017871 GO:0005524
Car06g01910 1252 Gene3D - 341 597 IPR027417 -
Car06g01910 1252 Gene3D ABC transporter type 1, transmembrane domain 67 980 IPR036640 GO:0005524|GO:0016021
Car06g01910 1252 SUPERFAMILY ABC transporter transmembrane region 670 990 IPR036640 GO:0005524|GO:0016021
Car06g01910 1252 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 308 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car06g01910 1252 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 316 - -
Car06g01910 1252 ProSitePatterns ABC transporters family signature. 1146 1160 IPR017871 GO:0005524
Car06g01910 1252 Pfam ABC transporter transmembrane region 685 956 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car06g01910 1252 Pfam ABC transporter transmembrane region 18 293 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car06g01910 1252 Pfam ABC transporter 1026 1174 IPR003439 GO:0005524
Car06g01910 1252 Pfam ABC transporter 361 510 IPR003439 GO:0005524
Car06g01910 1252 SMART AAA_5 370 556 IPR003593 -
Car06g01910 1252 SMART AAA_5 1034 1226 IPR003593 -
Car06g01910 1252 CDD ABC_6TM_Pgp_ABCB1_D2_like 673 989 - -
Car06g01910 1252 CDD ABC_MTABC3_MDL1_MDL2 1007 1246 - -
Car06g01910 1252 MobiDBLite consensus disorder prediction 603 622 - -
Car06g01910 1252 SUPERFAMILY ABC transporter transmembrane region 6 327 IPR036640 GO:0005524|GO:0016021
Car06g01910 1252 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 1247 IPR039421 -
Car06g01910 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 584 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01910 Car-Chr6 19024110 19030628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01910 4 587 Calmodulin-binding Proteins AT2G36910 35.067 1.75e-102 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01910 K05658 - gmx:100788127 2212.96