Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01903 ATGGTTTCCCGAGAAAACACCAATTGGCTTTTCGATTACGGTTTGATCGATGATATTCCAGTTCCCGATCCCACCTTCGCCGTTCCCTCTTCAACCCTCCTCACCTGGCCTACGCACCCTTTCAATATTTCTTCCAATGTCGGTGCTGAAATTGATGGCTCATTAGGGGATTCTGACAGTCTCAAAGAGTCTGGTTCCAAGAAGAGGGTTAGATCTGAGTCCTGTGCTGCTACTAGCTCCAAGGCTTGTCGGGAGAAGTTGCGTAGAGATAGACTTAATGACAAGTTTATTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCTGCCAAAACAGACAAGGCTGCTATCCTGATTGATGCTGTCCGAATGGTGACCCAGTTAAGGGGTGAGGCCCAAAAGTTGAAAGACTCTAATACGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGTGACGAGAAACAGAGGCTCAAGGCAGAGAAAGAGAAGTTGGAGCAGCAGCTGAAATCTATGAATGCACAACCTAGTTTCTTGCCTACCCCCACTGCACTCCCTGCTGCGTTTGCTGCACAAGGCCAAGCCCATGGCAACAAGTTGGTACCCTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCACCTGCTGCAGTGGACACCTCACAGGATCACGTACTTCGTCCTCCAGTTGCCTAA 714 0.4776 MVSRENTNWLFDYGLIDDIPVPDPTFAVPSSTLLTWPTHPFNISSNVGAEIDGSLGDSDSLKESGSKKRVRSESCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEAQKLKDSNTGLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKSMNAQPSFLPTPTALPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01903 237 Pfam Helix-loop-helix DNA-binding domain 80 127 IPR011598 GO:0046983
Car06g01903 237 SMART finulus 82 133 IPR011598 GO:0046983
Car06g01903 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 146 IPR036638 GO:0046983
Car06g01903 237 CDD bZIP 142 174 - -
Car06g01903 237 Gene3D - 79 156 IPR036638 GO:0046983
Car06g01903 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983
Car06g01903 237 PANTHER BHLH TRANSCRIPTION FACTOR 1 237 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Car06g01903 237 CDD bHLH_AtILR3_like 81 156 - -
Car06g01903 237 Coils Coil 124 179 - -
Car06g01903 237 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01903 Car-Chr6 18970866 18975314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01903 1 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 71.311 1.94e-116 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car06g01903 HLH 9.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01903 - - gmx:100788858 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02133 01 46904392 46907444 Car06g01903 06 18970866 18975314 PCT