Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01892 ATGAGTGAGTCATGTGACCCAGTACTCATCAAGATTGAAGGAGGTACAAAGAGCACTTTAAAGGGTTTTACTTTTACCTTAAACCCCATGGCTTTGACGATGAGGGCTGCAGCGGCGGCGGCTCCCCGCGGAGCTGCTCCCGCCCGACAGATGGCTGAGCCCAACACCAACCTCTTCGTCTCTGGGCTTAGCAAACGTACTACAACAGAGAGGCTGCGGGAAGAATTTCAAAAGTTTGGTGAAGTTGTTCATGCAAGGGTGGTAACTGATCGAGTCTCAGGTTACTCTAAGGGGTTTGGCTTTGTGCAATATGCTACTATAGAAGATGCTGCTAAGGGCATTGAAGGCATGGATGGCAAGTTTTTGGATGGCTGGGTTATATTTGCAGAGTATGCAAGACCAAGACCACCACCTGGACAATATGTAAATAATATGTCTCAACAGTATGTACGACATTAA 459 0.4728 MSESCDPVLIKIEGGTKSTLKGFTFTLNPMALTMRAAAAAAPRGAAPARQMAEPNTNLFVSGLSKRTTTERLREEFQKFGEVVHARVVTDRVSGYSKGFGFVQYATIEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQYVNNMSQQYVRH 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01892 152 PANTHER TRANSFORMER-2-RELATED 40 150 - -
Car06g01892 152 SMART rrm1_1 57 130 IPR000504 GO:0003723
Car06g01892 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 124 IPR000504 GO:0003723
Car06g01892 152 Gene3D - 33 141 IPR012677 -
Car06g01892 152 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 40 150 - -
Car06g01892 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 134 IPR000504 GO:0003723
Car06g01892 152 SUPERFAMILY RNA-binding domain, RBD 40 148 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01892 Car-Chr6 18886945 18890667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01892 33 136 Eukaryotic Initiation Factors Gene Family AT3G11400 35.577 2.81e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01892 - - gmx:100784609 194.512