Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01882 ATGAACACATATTCTTCTTCACCTTCAATGGGAATGGTTTATCAAAACATGAGTTCTCTTTCACTTTCTTCCTCCAACAACTATGCTGCTTCTTCTTCATCTCAACATTGCTATCTTTCTAATCAGGGTACTTCTGCTAACTGGTCTTTACCTTTTATGAGGGAATGTTGTGTTACTGAGGAAAACAACAACAGTGATGTTGGGGACGGAAATGCTTCTGATTCTGCTGATGCTGTTGCTGAAAACAGTGACAAAATTATTAACTTTAGTGAAGACAACAACCCTAATGACAGTGGCAAAGAGGTAAATACTGAACATTCTAAACTATGTGCAAGAGGTCATTGGAGACCTGCAGAAGATTCTAAGCTTAAAGAACTTGTTGCTCTTTATGGTCCTCAAAACTGGAATCTCATAGCAGAAAAGCTAGAAGGAAGATCTGGTAAGAGTTGTAGGTTGAGATGGTTCAACCAGTTGGATCCAAGGATAAATAGAAGAGCTTTTAGTGAAGAAGAGGAAGAAAGGCTAATGCAAGCTCATAGGATTTATGGAAACAAATGGGCCATGATTGCTAGGCTTTTCCCTGGTAGAACAGATAATGCTGTTAAGAATCACTGGCATGTTATAATGGCTAGAAAGTACAGAGAACAATCAAGTGCTTACAGAAGGAGGAGGCTGAACCAATCTGTTTACAGAAGAATGGAAGAAGACAATACAAGTTTTGTCTCTAGAGACTTAGTCACAGGTGGGATAGAACCAATGGCACCACCATACTGTATCACCCTCCCAAATGGAACACTTGGCTTTAACATGGCTACTTTTCCATATTCACCATCCTTTCATGGAGTAGTTGATGCTACCAATGAACCAATTTCAACTAACAAACATGTCCTTACTCCTCCTATTGGCTTGTATTCACAACAGACACCACTTGATTTCTTTTCTGGAGTTAGGAGAAATGACATGATGGGTGAGTATTATAATAACCAAATGAGATGTTGGGATAGGCCAAATGATTGTTCACATCATCAAACAAATACAAGTTTGTACACTCATTATCCTCCACAATATATCATGCCAATACAAGAAGAAAACAAGAATCACAATAATAACTTTGACAGTTCATCAAAATCCACCACAGCAACAACAAGAAAACCAGTTTCACAGATAATTTTGGGCAGTGAAGTTTCACTATCAACAGTAGCAGAAGAAAGAGAGCAaatcctgatgatgagtgatgatgaagcagatggagatgcaaatcctccaTTTATTGACTTCCTTGGAGTAGGAGCCACATGA 1299 0.3703 MNTYSSSPSMGMVYQNMSSLSLSSSNNYAASSSSQHCYLSNQGTSANWSLPFMRECCVTEENNNSDVGDGNASDSADAVAENSDKIINFSEDNNPNDSGKEVNTEHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLNQSVYRRMEEDNTSFVSRDLVTGGIEPMAPPYCITLPNGTLGFNMATFPYSPSFHGVVDATNEPISTNKHVLTPPIGLYSQQTPLDFFSGVRRNDMMGEYYNNQMRCWDRPNDCSHHQTNTSLYTHYPPQYIMPIQEENKNHNNNFDSSSKSTTATTRKPVSQIILGSEVSLSTVAEEREQILMMSDDEADGDANPPFIDFLGVGAT 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01882 432 MobiDBLite consensus disorder prediction 364 384 - -
Car06g01882 432 Gene3D - 112 163 - -
Car06g01882 432 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 158 IPR017930 -
Car06g01882 432 SMART sant 163 211 IPR001005 -
Car06g01882 432 SMART sant 111 160 IPR001005 -
Car06g01882 432 PANTHER MYB PROTEIN-RELATED 10 432 - -
Car06g01882 432 ProSiteProfiles Myb-like domain profile. 159 209 IPR001005 -
Car06g01882 432 CDD SANT 166 206 IPR001005 -
Car06g01882 432 Pfam Myb-like DNA-binding domain 164 207 IPR001005 -
Car06g01882 432 Pfam Myb-like DNA-binding domain 112 158 IPR001005 -
Car06g01882 432 ProSiteProfiles Myb-like domain profile. 112 158 IPR001005 -
Car06g01882 432 PANTHER MYB TRANSCRIPTION FACTOR 10 432 - -
Car06g01882 432 CDD SANT 115 156 IPR001005 -
Car06g01882 432 SUPERFAMILY Homeodomain-like 112 205 IPR009057 -
Car06g01882 432 Gene3D - 165 237 - -
Car06g01882 432 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 159 213 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01882 Car-Chr6 18807823 18809692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01882 1 224 MYB Transcription Factor Family AT1G69560 55.372 5.68e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car06g01882 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01882 K09422 - gmx:100804537 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01882 06 18807823 18809692 Car06g01882 06 18807823 18809692 ECH