Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01881 atgaatgtagatgatgatgatgatgTGGCAGTTTTCATGCAGGAAAATGAATCATGGAGTCCGTCTAATTCAGATGAGACGAGGAGAGAAGAAGTGAATAAGAAGCGAAGTCGAGAAGAGGTTGCGAGTAAAAATGTTACAGATTCTAATCATTTATGGATTGAGAGAGAAAGGAGAAAGAAAATGAGGAACATGTACGATAtccttcattctttgcttcctcaccttccttcTAAGGCAGATTCGTCAACCATTTTGGATGAAGCAGTGAAGCAAATACAAAATCTACAGCAAACTCTGAAAAAACTAGAGAAACAAAAACAAGAAAAGCTCAAATCTATATATCAATTTAGGTGTGAGTCCTCTACGATTAACTCGCAGAGGCATCCCTACAAATCAAGGGAGGTATTCATATCCGGTGAAGGATCTTCGAGTTCTAACTCGGTTAATGCATTTTCAACACCTCGACCAACGGTAGCTTTTCAATCGTGGTATTCTTCAAATGTTGTGTTGAACATTTGTGGAGATGAAGCACAATTTTGCATATGTGCAACTAGGAAGCCAGGACTCTTGACCACAGTTGCTTTTGTGATGGAGAAACATAGTATTGCTCTCATTTATGCCAACATTTTTTGCAATGGTATTGGATACATGATTCAAGCCCATGTGAAACGAGTTTCACATGAATTTCAAGATGCAATTATCTTAGCGGAGGAAACTTACAAGCAAGCGGCAGAAGAAATTAAGAAGTTGATCTCTTAA 762 0.3543 MNVDDDDDVAVFMQENESWSPSNSDETRREEVNKKRSREEVASKNVTDSNHLWIERERRKKMRNMYDILHSLLPHLPSKADSSTILDEAVKQIQNLQQTLKKLEKQKQEKLKSIYQFRCESSTINSQRHPYKSREVFISGEGSSSSNSVNAFSTPRPTVAFQSWYSSNVVLNICGDEAQFCICATRKPGLLTTVAFVMEKHSIALIYANIFCNGIGYMIQAHVKRVSHEFQDAIILAEETYKQAAEEIKKLIS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01881 253 Gene3D - 25 113 IPR036638 GO:0046983
Car06g01881 253 MobiDBLite consensus disorder prediction 1 46 - -
Car06g01881 253 PANTHER - 26 249 IPR044278 GO:0003700|GO:0006355|GO:0009960
Car06g01881 253 Coils Coil 86 113 - -
Car06g01881 253 CDD bHLH_AtbHLH_like 51 98 IPR045239 -
Car06g01881 253 Coils Coil 234 253 - -
Car06g01881 253 PANTHER TRANSCRIPTION FACTOR BHLH95-LIKE 26 249 - -
Car06g01881 253 MobiDBLite consensus disorder prediction 22 46 - -
Car06g01881 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 124 IPR036638 GO:0046983
Car06g01881 253 SMART finulus 52 102 IPR011598 GO:0046983
Car06g01881 253 Pfam Helix-loop-helix DNA-binding domain 51 97 IPR011598 GO:0046983
Car06g01881 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 96 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01881 Car-Chr6 18773444 18778930 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01881 28 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 36.653 4.03e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car06g01881 HLH 6.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01881 - - mtr:MTR_4g085700 211.46