Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01880 ATGGCCGATTTTGCTTGCTGGTCACCCGATCACGTTAACATGGGGAGGGTAAAGCTAAAGATAAAGAAGTTGGAGAACACCAATGGCCGACAGGCAACATATGCTAAAAGGAAGAATGGAATAATGAAAAAAGCTACTGAGCTATCTATACTCTGTGATATAGATATTATACTTCTCATGTTCTCTCCTGGTGGAAAACCTTCCTTATGCAGGGGGAGACGCGGTAACTTCGAGGAGGTTATTGCAAAGTTTGCTCAACTAACTCCCCAAGAAAGGGCGAAAAGGAAAACATTTAAGAAGTTAGATCACAATGTAAACATACAAGAATTTATGGGTGCAAGTAGTCAAACTATTGAGGATCTAAGTAATCATGCCAAGCTATTACAGATTCAAATTTCTGAAATCCATGAGAGAGTAAGTCAATGGACAGAGTGTGATAAAATAAGCAGTGTGGAACAATTGGGACAGATGGAAAATTCACTCAGACAATCACTTAATCAAATTCAAACCCGAAAGGAAACAATGAAAAACCAACAAATTGTGTCACTACAATGCAATAACCAGTTCAATGAAATGAATATTCCCTTCCGAATGAACACAGACCAGCATCTCCAACCTTTATCATGGATTGCTAATGGTGACAACCAAAACATAGTTTTACCTGAGGACTCAAACTTGTTTCTCCATAAAGAAGTTGAGGGATCAGCAAGTTCATCTTTTGGGAGTTATGCTAGTTATCTTGGGTCAAGTGGCAAAACTGAGATATCTAACTCTGGGCCAGAAAGTTGTGTCCTCAGTGATATGAGCAGCAATGCTCCACTGAGGCAACAATTGAATGGGCAATTTCCATACATGCCATACAATTTTAATTTATTGAATAATTTGAAGTTCCAACCAGCTGCAGAGATTAATCCACATGAGAACCCTGCTGATTATCATGTGAATGGAAGCTTTGAAGCTCCTAGACAAGGTTATGAATCTAACAACCATGGATGGGCCTCCACATCTGGGCCATGTGCTGTTACTATGTTTGATGAGCATTTGTATGCTCAGCAACCCAACTAA 1065 0.3953 MADFACWSPDHVNMGRVKLKIKKLENTNGRQATYAKRKNGIMKKATELSILCDIDIILLMFSPGGKPSLCRGRRGNFEEVIAKFAQLTPQERAKRKTFKKLDHNVNIQEFMGASSQTIEDLSNHAKLLQIQISEIHERVSQWTECDKISSVEQLGQMENSLRQSLNQIQTRKETMKNQQIVSLQCNNQFNEMNIPFRMNTDQHLQPLSWIANGDNQNIVLPEDSNLFLHKEVEGSASSSFGSYASYLGSSGKTEISNSGPESCVLSDMSSNAPLRQQLNGQFPYMPYNFNLLNNLKFQPAAEINPHENPADYHVNGSFEAPRQGYESNNHGWASTSGPCAVTMFDEHLYAQQPN 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01880 354 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 67 IPR002100 GO:0003677|GO:0046983
Car06g01880 354 SUPERFAMILY SRF-like 14 94 IPR036879 GO:0003677|GO:0046983
Car06g01880 354 Coils Coil 158 178 - -
Car06g01880 354 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Car06g01880 354 ProSiteProfiles MADS-box domain profile. 14 66 IPR002100 GO:0003677|GO:0046983
Car06g01880 354 Coils Coil 118 138 - -
Car06g01880 354 CDD MADS 15 67 - -
Car06g01880 354 PANTHER SERUM RESPONSE FACTOR HOMOLOG 14 353 - -
Car06g01880 354 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Car06g01880 354 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Car06g01880 354 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Car06g01880 354 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 14 353 - -
Car06g01880 354 Gene3D - 27 106 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01880 Car-Chr6 18767591 18772166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01880 14 354 Type I MADS-box Gene Family AT2G03060 47.382 4.50e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car06g01880 SRF-TF 5.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01880 - - gmx:100811701 540.036