Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01877 ATGGCAACGACAACACAAGAATTCATGCAACAACTCAGATCCAAAGCAACAGAACTTTTCATTCGAGAAGAATGGAACGATTCCATCAAAACCTATTCTCAATTCATCAATCTCTGCACCCACCATCTTTCTCTTCCTCACTCTTCCCCACTTCACCTCCAAAAGCTTCGCAAATCCCTCTGTATATCCTTCTGCAATCGCGCTGAAGCTAAATCAAGATTACGCGATTTCAACTCCGCGTTACAAGATTGCGATCACGCTTTGCAAATCGACGCAACCCATTTCAAAACCCTTGTTTGCAAAGGTAAGGTTTTGCTCTCTCTTAATAGATACTCCATGGCTCTTCATTGCTTTAAAACCGCTCTTCTTGATCCTCAAGCGAATGGGAACTGTGAATTCATTGATGGGTACTTTGAAAAATGCAAAAAGTTTGAATTTTTATCCAGGACTGGGTCTTTGGATCTTTCTGATTGGGTTTTAAATGGCTTTTCTGCAAAAGCTCCTGAACTTGCTGAGTTTATTGGGGCTGTTGAGATTAGAAAATCTGAAATAAGTGGGCGTGGAATTTTTGTTACTAAGAATATTGATGCAGGGTCTTTGATTTTGGTCACTAAAGCAATTGCAATGGAGAGGAGTATATTAGCAGGTAAAGATTTGAGTGAGGATACCCAATTAGTTATGTGGAAGAATTTTGTTGATAAAGTTGTAGACTTTACTAGAAAATGCCATAAAACTAGGAATTTGATTTGTAAGTTGTCAATTGGGGAAAATGAGGATTCACTTGAGGTGCCTGATGTAGATATTTTTAGGCCTGAGAGTGTTGTGGAAGTGAATTCAAGTGAGgatattgatgttgatattgatattgatatggttaggttattgGCTATATTGGATGTTAATTCTCTCACTGAGGATGCAGTTTCAGCCAATGTTTTGAGGAAAAACCATGATTGTTATGGTGTTGGACTATGGTTGCTTCCCTCATTCATTAATCACTCATGTTGTCCTAATGCAAGGCGCTTGCACGTTGGTGACTATTTGATAGTTCATGCTTCAAGAGATTTGAAGGCTGGTGAAGAGATCACTTTTGCTTATCTTGACCCTCTTTCTCCCTTGAACAAGCGAAAAGAGATGTCTGTTACATGGGGGATTCATTGCAAGTGTAAGAGGTGCAAGTTTGAGGGAGAAATCTTGCTTTCCAAGCAAGAGGTGAAGGAGATTGAGATTGGTATTGAAAGAGGGACGGATGTAGGTGGATTGGTGTATAAACTTGAGGAAATGATGAAGAGATGGAAGATTAGGGGGAAAGAGAAGGGATACTTGAGGGCTTCGTTTTGGTCAGTATATTCAGAGGCTTACGGTTCGGAGAGGTGTATGAAAAGATGGGGAAGGCGAATTCCGGCATTAGATGCAGTGGCTGATAGTATCACAGATGTAGTTGGAGGTGATCTTAGGGTACTTAAGATCTTAATGGAAGAATTGAAGAGAAAAGGTGGTGGCAATAGTAGTGGACTCGTTGAGATGGAGAAAGTTTTCACGTTAGCAAGAGAGGTTTATGGGAAGGTAGTGAAAAAACAAGCAATGAGGACATTGCTTGAGCTTTGCATTGCTGATTGA 1620 0.3944 MATTTQEFMQQLRSKATELFIREEWNDSIKTYSQFINLCTHHLSLPHSSPLHLQKLRKSLCISFCNRAEAKSRLRDFNSALQDCDHALQIDATHFKTLVCKGKVLLSLNRYSMALHCFKTALLDPQANGNCEFIDGYFEKCKKFEFLSRTGSLDLSDWVLNGFSAKAPELAEFIGAVEIRKSEISGRGIFVTKNIDAGSLILVTKAIAMERSILAGKDLSEDTQLVMWKNFVDKVVDFTRKCHKTRNLICKLSIGENEDSLEVPDVDIFRPESVVEVNSSEDIDVDIDIDMVRLLAILDVNSLTEDAVSANVLRKNHDCYGVGLWLLPSFINHSCCPNARRLHVGDYLIVHASRDLKAGEEITFAYLDPLSPLNKRKEMSVTWGIHCKCKRCKFEGEILLSKQEVKEIEIGIERGTDVGGLVYKLEEMMKRWKIRGKEKGYLRASFWSVYSEAYGSERCMKRWGRRIPALDAVADSITDVVGGDLRVLKILMEELKRKGGGNSSGLVEMEKVFTLAREVYGKVVKKQAMRTLLELCIAD 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01877 539 ProSiteProfiles SET domain profile. 175 367 IPR001214 GO:0005515
Car06g01877 539 Gene3D Tetratricopeptide repeat domain 3 143 IPR011990 GO:0005515
Car06g01877 539 Gene3D SET domain 286 396 IPR046341 -
Car06g01877 539 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 4 528 - -
Car06g01877 539 CDD SET_SMYD 295 392 - -
Car06g01877 539 SMART set_7 175 373 IPR001214 GO:0005515
Car06g01877 539 Pfam SET domain 186 366 IPR001214 GO:0005515
Car06g01877 539 SUPERFAMILY SET domain 176 393 IPR046341 -
Car06g01877 539 SUPERFAMILY TPR-like 10 122 IPR011990 GO:0005515
Car06g01877 539 SMART tpr_5 61 94 IPR019734 GO:0005515
Car06g01877 539 SMART tpr_5 95 127 IPR019734 GO:0005515
Car06g01877 539 SMART tpr_5 9 42 IPR019734 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Car06g01877 SET 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01877 - - mtr:MTR_4g082140 929.472