Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01865 ATGCAGCAACGCAATGCACCCAAAGGAAAACCACACCTTTTGAAAAGAAAAATGGTTaacaagagaaaaagaagagaatgtgaagaaggggaaaagaacaatgaagaagCAAATACTGAATGGAAACATATAAGGGAAGAGGCAGCATCAGTAACAGCTGCTCTACTTCGAGTACGAAGAGCAAGAAAGCGTTACATTGGGGTGAGGCAAAGACCTTCAGGGAGATGGGTGGCTGAGATCAAAGACACTATACAGAACATAAGACTATGGTTGGGGACTTATGACACTGGTGAAGAGGCTGCTAGAGCTTACGATGAGGCTGCACGTTTGCTTCGCGGCGCGAACACGCGCACAAATTTCTTTCTTTGTCAATCTTCTCATTATGTTCCTGCTCTTCCTCCAAAGATTTCCAAACTCCTGTTTCTTAGGCTCAAAGCCAGAAACATTGCATCTTCTTGTATTCCGACTAACCACTATGATGAGCAAGAAATGAAAGAAGAACCGGAACACCATTTTTTTCACCAAATAGAAGAAAATTTTCTCGAAAGTTATGCTACTGCTAGTTATGGTTCTTCTGCTGTAACTACTTTTGACTGTACTAGTGGGACTAATGAGGAAAATTTTAACCAAGAGGGAAGCATAGAGGATTTCGGATTGGGGTATCATTGTGCTACTGTTAACAGTGCCGAAGATGGTGGAAACAACCAGATTGTGGGGTGTCATGGAGAATTTGAAAACTGTGATGTTGGACTCATTGACTTCCAGTTTCTGGATACTGTTGGATCATTAAGTCACTCTTACTCTTCTTCTCCGTTCGAAATAGCACAGGAGATGGTGGGGCCAATCGCGGAAGAGAAATTCGATGTGAATGATTCACTGTTACTTAGAGAAACTTTTAGAATGAAGTATGAACGTAAATTCTCAGCTTGTCTTTACACCTTGGTTGGGGTGTCTGAGTGTTTGAGGCTACAAGTTGGACCAGAAAATGGAAATCAATTATAA 1002 0.3962 MQQRNAPKGKPHLLKRKMVNKRKRRECEEGEKNNEEANTEWKHIREEAASVTAALLRVRRARKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTGEEAARAYDEAARLLRGANTRTNFFLCQSSHYVPALPPKISKLLFLRLKARNIASSCIPTNHYDEQEMKEEPEHHFFHQIEENFLESYATASYGSSAVTTFDCTSGTNEENFNQEGSIEDFGLGYHCATVNSAEDGGNNQIVGCHGEFENCDVGLIDFQFLDTVGSLSHSYSSSPFEIAQEMVGPIAEEKFDVNDSLLLRETFRMKYERKFSACLYTLVGVSECLRLQVGPENGNQL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01865 333 MobiDBLite consensus disorder prediction 22 37 - -
Car06g01865 333 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Car06g01865 333 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Car06g01865 333 Pfam AP2 domain 64 113 IPR001471 GO:0003700|GO:0006355
Car06g01865 333 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Car06g01865 333 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Car06g01865 333 MobiDBLite consensus disorder prediction 1 37 - -
Car06g01865 333 CDD AP2 63 120 IPR001471 GO:0003700|GO:0006355
Car06g01865 333 Coils Coil 20 40 - -
Car06g01865 333 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 332 - -
Car06g01865 333 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 21 332 - -
Car06g01865 333 Gene3D AP2/ERF domain 63 122 IPR036955 GO:0003700|GO:0006355
Car06g01865 333 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01865 Car-Chr6 18565271 18566272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01865 62 149 AP2-EREBP Transcription Factor Family AT5G19790 60.227 4.72e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Car06g01865 AP2 7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01865 K09286 - gmx:100793940 349.362